View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_21 (Length: 412)
Name: NF3107_low_21
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 2287463 - 2287786
Alignment:
| Q |
19 |
gaagtcatattgctgggtatatgagttatggtaaactctcatgctttatataatgttagaaatgaaagttttagttctatatttagaaccttatgtggtg |
118 |
Q |
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| T |
2287463 |
gaagtcatattgctgggtatatgagttatggtaaactctcatgctttatataatgttagaaatgaaagttttagttctatatttagaagcttatgtagtg |
2287562 |
T |
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| Q |
119 |
gataaccgttctattttcttaggctactcttgat--ccattgaaatttgcttaagaaagggtcctcatacaaataatatttgcttgaaatagcaatggct |
216 |
Q |
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| T |
2287563 |
gataaccgttcttttttcttaggctactcttgatatccattgaaacttgcttaagaaagggtcctcatacgaataatatttgcttgaaata---atcact |
2287659 |
T |
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| Q |
217 |
atgaatctatccacttggccaacaagatccaagggtgcacaagcttcgtgaaatgatcgggacattttttgtcactggaaatagcactactcttgattaa |
316 |
Q |
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| T |
2287660 |
atgaatctatccacttggccaacaagatccaagggtgcacaagcttcgtgaaatgatcgggacattttttgtcgctggaaatagcactactcttgattaa |
2287759 |
T |
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| Q |
317 |
ttcgactatgagcctcacctcggctat |
343 |
Q |
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| T |
2287760 |
ttcgactatgagcctcacctcggctat |
2287786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 2044315 - 2044103
Alignment:
| Q |
25 |
atattgctgggtatatgagttatggtaaactctcatgctttatataatgttagaaatgaaagttttagttctatatttagaaccttatgtggtggataac |
124 |
Q |
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| T |
2044315 |
atattgctgggtatatgagttatggtaaactctcatgctttatataatggtagaaatgaaagttttggttctatatttagaaccttatgtggtggataac |
2044216 |
T |
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| Q |
125 |
cgttctattttcttaggctactcttgatccattgaaatttgcttaagaaagggtcctcatacaaataatatttgcttgaaatagcaatggctatgaatct |
224 |
Q |
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| T |
2044215 |
cgttctattttcttaggctactcttgatccattgaaatttgcttaagaaagggtcctcatacaaataatatttgcttgaaatagcaatggctatgaatct |
2044116 |
T |
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| Q |
225 |
atccacttggcca |
237 |
Q |
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| T |
2044115 |
atccacttggcca |
2044103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 312 - 402
Target Start/End: Original strand, 2287785 - 2287875
Alignment:
| Q |
312 |
attaattcgactatgagcctcacctcggctatgaacgagaaaatgtatgttatcaattctactataaaaaatggcgtcgttacctcctttg |
402 |
Q |
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| T |
2287785 |
attaattcgactatgagcctcacctcggctatgaacgagaaaatgtatgttatcaattctactataaaaaatggcctcgttacctcctttg |
2287875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 2262634 - 2262732
Alignment:
| Q |
309 |
ttgattaattcgactatgagcctcacctcgg-ctatgaacgagaaaatgtatgttatcaattctactat-----aaaaaatggcgtcgttacctcctttg |
402 |
Q |
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| T |
2262634 |
ttgattaattcgactatgagcctctcctcggcctatgaacgtg-aaatgtatgtcatcaattcgactataaaaaaaaaaatggcgtcgttacctcctttg |
2262732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 30302965 - 30302893
Alignment:
| Q |
237 |
aacaagatccaagggtgcacaagcttcgtgaaatgatcgggaca-ttttttgtcactggaaatagcactactc |
308 |
Q |
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| T |
30302965 |
aacatgatccaatggtgcacagacatcgtgaaaagctcgggacagttttttgtcgctgggaatagcactactc |
30302893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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