View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_low_22 (Length: 406)

Name: NF3107_low_22
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_low_22
NF3107_low_22
[»] chr8 (8 HSPs)
chr8 (19-373)||(22942971-22943324)
chr8 (344-406)||(4948688-4948748)
chr8 (375-406)||(30271247-30271278)
chr8 (344-404)||(31514911-31514967)
chr8 (377-406)||(20873105-20873134)
chr8 (377-406)||(24613556-24613585)
chr8 (344-373)||(31109464-31109493)
chr8 (344-376)||(3025632-3025664)
[»] chr1 (19 HSPs)
chr1 (344-406)||(35702548-35702611)
chr1 (344-406)||(22881573-22881639)
chr1 (344-406)||(24334670-24334728)
chr1 (375-406)||(41877462-41877493)
chr1 (344-406)||(13436494-13436556)
chr1 (376-406)||(19058849-19058879)
chr1 (344-373)||(16297227-16297256)
chr1 (344-373)||(21365998-21366027)
chr1 (344-373)||(22515833-22515862)
chr1 (377-406)||(22515881-22515910)
chr1 (344-373)||(22947814-22947843)
chr1 (344-373)||(37598915-37598944)
chr1 (344-373)||(42359395-42359424)
chr1 (377-406)||(46348377-46348406)
chr1 (344-373)||(47989592-47989621)
chr1 (377-406)||(51410061-51410090)
chr1 (378-406)||(18337365-18337393)
chr1 (344-388)||(35919232-35919276)
chr1 (377-405)||(38078655-38078683)
[»] chr4 (14 HSPs)
chr4 (343-405)||(30094066-30094127)
chr4 (353-406)||(6879435-6879488)
chr4 (344-406)||(42640565-42640637)
chr4 (344-373)||(715551-715580)
chr4 (344-373)||(752877-752906)
chr4 (344-373)||(3064874-3064903)
chr4 (344-373)||(4383450-4383479)
chr4 (344-373)||(5775310-5775339)
chr4 (377-406)||(12797332-12797361)
chr4 (377-406)||(16073430-16073459)
chr4 (344-373)||(22440563-22440592)
chr4 (344-373)||(23292932-23292961)
chr4 (344-373)||(28084608-28084637)
chr4 (377-406)||(34306798-34306827)
[»] chr7 (7 HSPs)
chr7 (344-406)||(28155606-28155667)
chr7 (344-394)||(11272536-11272586)
chr7 (344-386)||(35862023-35862064)
chr7 (344-373)||(5409777-5409806)
chr7 (377-406)||(21880188-21880217)
chr7 (344-373)||(29763135-29763164)
chr7 (344-372)||(30813882-30813910)
[»] chr5 (16 HSPs)
chr5 (350-406)||(15884024-15884084)
chr5 (344-405)||(10298606-10298663)
chr5 (344-406)||(6247658-6247723)
chr5 (344-391)||(41995531-41995577)
chr5 (344-373)||(4105343-4105372)
chr5 (344-373)||(14873606-14873635)
chr5 (344-373)||(17123131-17123160)
chr5 (344-373)||(21191002-21191031)
chr5 (344-373)||(21576691-21576720)
chr5 (344-373)||(22423770-22423799)
chr5 (344-373)||(35017127-35017156)
chr5 (344-373)||(39268544-39268573)
chr5 (344-373)||(39698636-39698665)
chr5 (344-373)||(43001889-43001918)
chr5 (378-406)||(21191051-21191079)
chr5 (378-406)||(33178061-33178089)
[»] chr6 (16 HSPs)
chr6 (344-406)||(7938152-7938213)
chr6 (344-388)||(8805530-8805574)
chr6 (344-373)||(4878026-4878055)
chr6 (377-406)||(6898275-6898304)
chr6 (377-406)||(16388211-16388240)
chr6 (344-373)||(17327596-17327625)
chr6 (344-373)||(17841535-17841564)
chr6 (377-406)||(28152134-28152163)
chr6 (377-406)||(28715331-28715360)
chr6 (377-406)||(32978893-32978922)
chr6 (377-406)||(34595170-34595199)
chr6 (377-405)||(426508-426536)
chr6 (344-388)||(7086854-7086898)
chr6 (344-372)||(7723205-7723233)
chr6 (378-406)||(7977825-7977853)
chr6 (354-406)||(21924907-21924958)
[»] chr2 (9 HSPs)
chr2 (374-406)||(21624303-21624335)
chr2 (344-373)||(2438665-2438694)
chr2 (377-406)||(2438713-2438742)
chr2 (377-406)||(15972909-15972938)
chr2 (377-406)||(19536391-19536420)
chr2 (344-373)||(26769606-26769635)
chr2 (344-373)||(37419838-37419867)
chr2 (377-405)||(5040771-5040799)
chr2 (377-405)||(12224260-12224288)
[»] scaffold0004 (1 HSPs)
scaffold0004 (344-387)||(92893-92935)
[»] chr3 (10 HSPs)
chr3 (344-382)||(4990918-4990955)
chr3 (376-406)||(25775545-25775575)
chr3 (373-406)||(8587011-8587044)
chr3 (344-373)||(8789494-8789523)
chr3 (344-373)||(8842413-8842442)
chr3 (344-373)||(20503549-20503578)
chr3 (344-373)||(34185058-34185087)
chr3 (377-406)||(55401111-55401140)
chr3 (344-373)||(55401159-55401188)
chr3 (374-406)||(8383293-8383325)
[»] scaffold0793 (1 HSPs)
scaffold0793 (344-373)||(4827-4856)
[»] scaffold0652 (1 HSPs)
scaffold0652 (377-406)||(456-485)
[»] scaffold0475 (1 HSPs)
scaffold0475 (344-373)||(3392-3421)
[»] scaffold0083 (1 HSPs)
scaffold0083 (377-406)||(45524-45553)
[»] scaffold0053 (1 HSPs)
scaffold0053 (377-406)||(8834-8863)
[»] scaffold0027 (1 HSPs)
scaffold0027 (344-373)||(46741-46770)
[»] scaffold0512 (1 HSPs)
scaffold0512 (377-405)||(5030-5058)
[»] scaffold0086 (1 HSPs)
scaffold0086 (344-372)||(3024-3052)
[»] scaffold0009 (1 HSPs)
scaffold0009 (345-373)||(188484-188512)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 22942971 - 22943324
Alignment:
Q  19 aaagtcgacagtaacggtgtgaatgtcatggtagccttatacgaaaatggtttagttaccgattgtccaagaggggagaacaaaggccgggttctatcaa 118  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22942971 aaagtcgacagcaacggtgtgaatgtcatggtcgccttatacgaaaatggtttagttaccgattgtccaagaggggagaacaaaggccgtgttctatcaa 22943070  T
Q  119 acgattttgtcgttagaaagctcgaaaaactctgcactgaaaaagacatatctgccaagaagacaataacaggaactgttaattttccgttatggggagg 218  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  22943071 atgattttgtcgttagaaagctcgaaaaactctgcactgaaaaagacatatctgccaagaagacaataacaggaactgttaattttccattgtggggagg 22943170  T
Q  219 attcaatagcagcaaatgtggtgtagctgtctttgttcaaagcccttctcaccagatttttggttcacagagttttcacctaccggatgatatatgatat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22943171 attcaatagcagcaaatgtggtgtagctgtctttgttcaaagcccttctcaccagatttttggttcacagagttttcacctaccggatgatatatgatat 22943270  T
Q  319 gatttttgtagtaaaatttgtcattagcacggacactcctcggattaggcgtgtc 373  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22943271 gatttttgtagtaaaatttgtcattagcac-gacactcctcggattaggcgtgtc 22943324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 4948748 - 4948688
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattacac 406  Q
    |||||| |||||| |  ||||||||||||| |  |||||||||||||||||||||||||||||    
T  4948748 agcacgtacactcattcgattaggcgtgtctc--gtgtccgacaccgacacttgtaattacac 4948688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 30271247 - 30271278
Alignment:
Q  375 cacgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||||    
T  30271247 cacgtgtccgacaccgacacttgtaattacac 30271278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 31514967 - 31514911
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattac 404  Q
    |||||||||||||||||||||||||||||    ||||||| ||||| ||||||||| ||||    
T  31514967 agcacggacactcctcggattaggcgtgt----cgtgtccaacaccaacacttgtagttac 31514911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 20873134 - 20873105
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  20873134 cgtgtccgacaccgacacttgtaattacac 20873105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 24613585 - 24613556
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  24613585 cgtgtccgacaccgacacttgtaattacac 24613556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 31109464 - 31109493
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  31109464 agcacggacactcctcggattaggcgtgtc 31109493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 3025664 - 3025632
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcaca 376  Q
    ||||||||||||||||||||||| |||||||||    
T  3025664 agcacggacactcctcggattagccgtgtcaca 3025632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 35702548 - 35702611
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcaca-cgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||    
T  35702548 agcacggacactcctcggattaggcgtgtcccatcgtgtccgacactgacacttgtaattacac 35702611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 22881573 - 22881639
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcaca----cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||| |||||| |     ||||||||||||||||||||||||||||||    
T  22881573 agcacggacactcctcggattagacgtgtcccggtgtcgtgtccgacaccgacacttgtaattacac 22881639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 24334670 - 24334728
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||| || ||||||||||||    |||||||||||||||||||||||||||||||    
T  24334670 agcacggacactacttggattaggcgtg----acgtgtccgacaccgacacttgtaattacac 24334728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 41877462 - 41877493
Alignment:
Q  375 cacgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||||    
T  41877462 cacgtgtccgacaccgacacttgtaattacac 41877493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 13436556 - 13436494
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||| |||||||||| |||||   |||||||||||||| |||| | |||||||||    
T  13436556 agcacggacacttctcggattagtcgtgttctacgtgtccgacaccaacacatataattacac 13436494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Original strand, 19058849 - 19058879
Alignment:
Q  376 acgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||||||||||    
T  19058849 acgtgtccgacaccgacacttgtaattacac 19058879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 16297227 - 16297256
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  16297227 agcacggacactcctcggattaggcgtgtc 16297256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 21365998 - 21366027
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  21365998 agcacggacactcctcggattaggcgtgtc 21366027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 22515833 - 22515862
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  22515833 agcacggacactcctcggattaggcgtgtc 22515862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 22515881 - 22515910
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  22515881 cgtgtccgacaccgacacttgtaattacac 22515910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 22947843 - 22947814
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  22947843 agcacggacactcctcggattaggcgtgtc 22947814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 37598944 - 37598915
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  37598944 agcacggacactcctcggattaggcgtgtc 37598915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 42359395 - 42359424
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  42359395 agcacggacactcctcggattaggcgtgtc 42359424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 46348377 - 46348406
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  46348377 cgtgtccgacaccgacacttgtaattacac 46348406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 47989621 - 47989592
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  47989621 agcacggacactcctcggattaggcgtgtc 47989592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 51410090 - 51410061
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  51410090 cgtgtccgacaccgacacttgtaattacac 51410061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Complemental strand, 18337393 - 18337365
Alignment:
Q  378 gtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||||||||    
T  18337393 gtgtccgacaccgacacttgtaattacac 18337365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 35919232 - 35919276
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacac 388  Q
    |||||||||| ||||| ||||||||||||| | ||||||||||||    
T  35919232 agcacggacagtcctccgattaggcgtgtcccgcgtgtccgacac 35919276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 38078655 - 38078683
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattaca 405  Q
    |||||||||||||||||||||||||||||    
T  38078655 cgtgtccgacaccgacacttgtaattaca 38078683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 30094127 - 30094066
Alignment:
Q  343 tagcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattaca 405  Q
    |||||||||||||| |||||||||||||||| |  ||||||||||||||||||||||||||||    
T  30094127 tagcacggacactcttcggattaggcgtgtcccg-gtgtccgacaccgacacttgtaattaca 30094066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 6879435 - 6879488
Alignment:
Q  353 actcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||| |||||||||||| |  ||||||||||||||||||||||||||||||    
T  6879435 actcctcagattaggcgtgttatgcgtgtccgacaccgacacttgtaattacac 6879488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 42640637 - 42640565
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc----------acacgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||| |||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  42640637 agcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgtccgacaccgacacttgtaattacac 42640565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 715551 - 715580
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  715551 agcacggacactcctcggattaggcgtgtc 715580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 752877 - 752906
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  752877 agcacggacactcctcggattaggcgtgtc 752906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 3064874 - 3064903
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  3064874 agcacggacactcctcggattaggcgtgtc 3064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 4383479 - 4383450
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  4383479 agcacggacactcctcggattaggcgtgtc 4383450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 5775310 - 5775339
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  5775310 agcacggacactcctcggattaggcgtgtc 5775339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 12797332 - 12797361
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  12797332 cgtgtccgacaccgacacttgtaattacac 12797361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 16073459 - 16073430
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  16073459 cgtgtccgacaccgacacttgtaattacac 16073430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 22440563 - 22440592
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  22440563 agcacggacactcctcggattaggcgtgtc 22440592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 23292932 - 23292961
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  23292932 agcacggacactcctcggattaggcgtgtc 23292961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 28084637 - 28084608
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  28084637 agcacggacactcctcggattaggcgtgtc 28084608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 34306798 - 34306827
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  34306798 cgtgtccgacaccgacacttgtaattacac 34306827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 28155667 - 28155606
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||| |||| |||||||||||||| |  |||||||||||||||||||||||||||||    
T  28155667 agcacggacattccttggattaggcgtgtc-ctggtgtccgacaccgacacttgtaattacac 28155606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 394
Target Start/End: Original strand, 11272536 - 11272586
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacac 394  Q
    ||||| || ||||||||||||||||||||| | ||||||||||||||||||    
T  11272536 agcacagatactcctcggattaggcgtgtcccgcgtgtccgacaccgacac 11272586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 35862064 - 35862023
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgac 386  Q
    |||||||||||||||||||||||||||||| | ||||||||||    
T  35862064 agcacggacactcctcggattaggcgtgtc-ctcgtgtccgac 35862023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 5409777 - 5409806
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  5409777 agcacggacactcctcggattaggcgtgtc 5409806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 21880217 - 21880188
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  21880217 cgtgtccgacaccgacacttgtaattacac 21880188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 29763135 - 29763164
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  29763135 agcacggacactcctcggattaggcgtgtc 29763164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 30813910 - 30813882
Alignment:
Q  344 agcacggacactcctcggattaggcgtgt 372  Q
    |||||||||||||||||||||||||||||    
T  30813910 agcacggacactcctcggattaggcgtgt 30813882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 406
Target Start/End: Complemental strand, 15884084 - 15884024
Alignment:
Q  350 gacactcctcggattaggcgtgtcaca----cgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||  ||    ||||||||||||||||||||||||||||||    
T  15884084 gacactcctcggattaggcgtgttccagtgtcgtgtccgacaccgacacttgtaattacac 15884024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 10298663 - 10298606
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattaca 405  Q
    ||||||||||||||||||||||||||||||  |    | |||||||||||||||||||||||    
T  10298663 agcacggacactcctcggattaggcgtgtccga----tacgacaccgacacttgtaattaca 10298606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 6247723 - 6247658
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcaca---cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||| |||||| ||||||||||| ||||| |    ||||||||||||||||||||||||||||||    
T  6247723 agcacagacacttctcggattaggtgtgtcccgtgccgtgtccgacaccgacacttgtaattacac 6247658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 41995577 - 41995531
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccga 391  Q
    ||||||||||||||| |||||||||||||| | |||||||||||||||    
T  41995577 agcacggacactcctaggattaggcgtgtc-ctcgtgtccgacaccga 41995531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 4105372 - 4105343
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  4105372 agcacggacactcctcggattaggcgtgtc 4105343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 14873635 - 14873606
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  14873635 agcacggacactcctcggattaggcgtgtc 14873606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 17123160 - 17123131
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  17123160 agcacggacactcctcggattaggcgtgtc 17123131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 21191002 - 21191031
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  21191002 agcacggacactcctcggattaggcgtgtc 21191031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 21576691 - 21576720
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  21576691 agcacggacactcctcggattaggcgtgtc 21576720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 22423770 - 22423799
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  22423770 agcacggacactcctcggattaggcgtgtc 22423799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 35017156 - 35017127
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  35017156 agcacggacactcctcggattaggcgtgtc 35017127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 39268544 - 39268573
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  39268544 agcacggacactcctcggattaggcgtgtc 39268573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 39698665 - 39698636
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  39698665 agcacggacactcctcggattaggcgtgtc 39698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 43001918 - 43001889
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  43001918 agcacggacactcctcggattaggcgtgtc 43001889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 21191051 - 21191079
Alignment:
Q  378 gtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||||||||    
T  21191051 gtgtccgacaccgacacttgtaattacac 21191079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Complemental strand, 33178089 - 33178061
Alignment:
Q  378 gtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||||||||    
T  33178089 gtgtccgacaccgacacttgtaattacac 33178061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 7938213 - 7938152
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||| ||||||||| |  ||||| ||||||||||||| |||||||||    
T  7938213 agcacggacactcctcggatcaggcgtgtctc-ggtgtcggacaccgacacttataattacac 7938152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 8805530 - 8805574
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacac 388  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||    
T  8805530 agcacggacactcctcggattaggcatgtcccacgtgtctgacac 8805574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 4878055 - 4878026
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  4878055 agcacggacactcctcggattaggcgtgtc 4878026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 6898275 - 6898304
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  6898275 cgtgtccgacaccgacacttgtaattacac 6898304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 16388211 - 16388240
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  16388211 cgtgtccgacaccgacacttgtaattacac 16388240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 17327596 - 17327625
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  17327596 agcacggacactcctcggattaggcgtgtc 17327625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 17841535 - 17841564
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  17841535 agcacggacactcctcggattaggcgtgtc 17841564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 28152163 - 28152134
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  28152163 cgtgtccgacaccgacacttgtaattacac 28152134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 28715360 - 28715331
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  28715360 cgtgtccgacaccgacacttgtaattacac 28715331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 32978893 - 32978922
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  32978893 cgtgtccgacaccgacacttgtaattacac 32978922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 34595199 - 34595170
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  34595199 cgtgtccgacaccgacacttgtaattacac 34595170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 426508 - 426536
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattaca 405  Q
    |||||||||||||||||||||||||||||    
T  426508 cgtgtccgacaccgacacttgtaattaca 426536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 7086898 - 7086854
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgacac 388  Q
    |||||||| |||||||||||||||| |||| |||||||| |||||    
T  7086898 agcacggaaactcctcggattaggcatgtctcacgtgtctgacac 7086854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Original strand, 7723205 - 7723233
Alignment:
Q  344 agcacggacactcctcggattaggcgtgt 372  Q
    |||||||||||||||||||||||||||||    
T  7723205 agcacggacactcctcggattaggcgtgt 7723233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 7977825 - 7977853
Alignment:
Q  378 gtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||||||||    
T  7977825 gtgtccgacaccgacacttgtaattacac 7977853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 406
Target Start/End: Original strand, 21924907 - 21924958
Alignment:
Q  354 ctcctcggattaggcgtgtcacacgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||| |  ||||||||||||||||| | |||||||||    
T  21924907 ctcctcggattaggcgtgtcccg-gtgtccgacaccgacacatataattacac 21924958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 21624335 - 21624303
Alignment:
Q  374 acacgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||||||||||||    
T  21624335 acacgtgtccgacaccgacacttgtaattacac 21624303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 2438665 - 2438694
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  2438665 agcacggacactcctcggattaggcgtgtc 2438694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 2438713 - 2438742
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  2438713 cgtgtccgacaccgacacttgtaattacac 2438742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 15972938 - 15972909
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  15972938 cgtgtccgacaccgacacttgtaattacac 15972909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 19536391 - 19536420
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  19536391 cgtgtccgacaccgacacttgtaattacac 19536420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 26769635 - 26769606
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  26769635 agcacggacactcctcggattaggcgtgtc 26769606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 37419867 - 37419838
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  37419867 agcacggacactcctcggattaggcgtgtc 37419838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 405
Target Start/End: Complemental strand, 5040799 - 5040771
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattaca 405  Q
    |||||||||||||||||||||||||||||    
T  5040799 cgtgtccgacaccgacacttgtaattaca 5040771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 405
Target Start/End: Complemental strand, 12224288 - 12224260
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattaca 405  Q
    |||||||||||||||||||||||||||||    
T  12224288 cgtgtccgacaccgacacttgtaattaca 12224260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 92935 - 92893
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtccgaca 387  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  92935 agcacggacactcctcggattaggcgtgtc-caggtgtccgaca 92893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 4990918 - 4990955
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtcacacgtgtc 382  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  4990918 agcacggacactcctcggattaggcgtgtc-cacgtgtc 4990955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 406
Target Start/End: Complemental strand, 25775575 - 25775545
Alignment:
Q  376 acgtgtccgacaccgacacttgtaattacac 406  Q
    |||||||||||||||||||||||||||||||    
T  25775575 acgtgtccgacaccgacacttgtaattacac 25775545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 8587011 - 8587044
Alignment:
Q  373 cacacgtgtccgacaccgacacttgtaattacac 406  Q
    ||||| ||||||||||||||||||||||||||||    
T  8587011 cacacatgtccgacaccgacacttgtaattacac 8587044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 8789494 - 8789523
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  8789494 agcacggacactcctcggattaggcgtgtc 8789523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 8842442 - 8842413
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  8842442 agcacggacactcctcggattaggcgtgtc 8842413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 20503578 - 20503549
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  20503578 agcacggacactcctcggattaggcgtgtc 20503549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 34185058 - 34185087
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  34185058 agcacggacactcctcggattaggcgtgtc 34185087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 55401140 - 55401111
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  55401140 cgtgtccgacaccgacacttgtaattacac 55401111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 55401188 - 55401159
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  55401188 agcacggacactcctcggattaggcgtgtc 55401159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 8383325 - 8383293
Alignment:
Q  374 acacgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||| |||||||||    
T  8383325 acacgtgtccgacaccgacacttataattacac 8383293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Original strand, 4827 - 4856
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  4827 agcacggacactcctcggattaggcgtgtc 4856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 456 - 485
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  456 cgtgtccgacaccgacacttgtaattacac 485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 3421 - 3392
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  3421 agcacggacactcctcggattaggcgtgtc 3392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Original strand, 45524 - 45553
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  45524 cgtgtccgacaccgacacttgtaattacac 45553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 8863 - 8834
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattacac 406  Q
    ||||||||||||||||||||||||||||||    
T  8863 cgtgtccgacaccgacacttgtaattacac 8834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 46770 - 46741
Alignment:
Q  344 agcacggacactcctcggattaggcgtgtc 373  Q
    ||||||||||||||||||||||||||||||    
T  46770 agcacggacactcctcggattaggcgtgtc 46741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 5030 - 5058
Alignment:
Q  377 cgtgtccgacaccgacacttgtaattaca 405  Q
    |||||||||||||||||||||||||||||    
T  5030 cgtgtccgacaccgacacttgtaattaca 5058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 372
Target Start/End: Complemental strand, 3052 - 3024
Alignment:
Q  344 agcacggacactcctcggattaggcgtgt 372  Q
    |||||||||||||||||||||||||||||    
T  3052 agcacggacactcctcggattaggcgtgt 3024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 188512 - 188484
Alignment:
Q  345 gcacggacactcctcggattaggcgtgtc 373  Q
    |||||||||||||||||||||||||||||    
T  188512 gcacggacactcctcggattaggcgtgtc 188484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University