View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_25 (Length: 399)
Name: NF3107_low_25
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 54199445 - 54199816
Alignment:
| Q |
17 |
aattttgttgatttgcagaattaatgctgttaggattcatatccttgttacttacatttggtacaaaatatattgcaaagatatgcatccctaataagtt |
116 |
Q |
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| T |
54199445 |
aattttgttgatttgcagaattaatgctgttaggattcatatccttgttacttacatttggtacaaaatatattgcaaagatatgcatccctaataagtt |
54199544 |
T |
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| Q |
117 |
aggtgatagcatgcttccatgtaagaagggggaagttgaagaagagtcaaaagatgataggagaaggttactttcttttgattttgatgagaatgtggta |
216 |
Q |
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| T |
54199545 |
aggtgatagcatgcttccatgtaagaagggggaagttgaagaagagtcaaaagatgataggagaaggttactttcttttgattttgatgagaatgtggta |
54199644 |
T |
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| Q |
217 |
tggcgtcgaggtttggcacctgcagccggtggtgatgactattgctcacataaagtgagcaagattgtataaatatttcatatttataatttaagtatat |
316 |
Q |
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| T |
54199645 |
tggcgtcgaggtttggcacctgcagccggtggtgatgactattgctcaaataaagtgagcaagattgtataaatatttcatatttataatttaagtatat |
54199744 |
T |
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| Q |
317 |
ccttaattttataattctgtgttactataatgaaatatatatgcagggtcaagtgcctttaatatctcaatctg |
390 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54199745 |
ccttaa--ttataattctttgttactataatgaaatatatatgcagggtcaagtgcctttaatatctcaatctg |
54199816 |
T |
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