View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_low_26 (Length: 398)
Name: NF3107_low_26
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 28 - 390
Target Start/End: Original strand, 2150905 - 2151267
Alignment:
| Q |
28 |
ggtggtgcccacacatgaaacactttatttaacatttttatgaataactgcacgaggagtcctttactcgatcagatttttggacatagaatattgtttt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2150905 |
ggtggtgcccacacatgaaacactttatttaacatttttatgaataactgcacgaggagtcctttactcgataagatttttggacatagaatattgtttt |
2151004 |
T |
|
| Q |
128 |
aaaatcagaaatttagacttacttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcag |
227 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151005 |
aaaatcagaaatttagactcacttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcag |
2151104 |
T |
|
| Q |
228 |
ctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcct |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151105 |
ctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcct |
2151204 |
T |
|
| Q |
328 |
acgtgaaataattcgaaggctcgagcaaaatccttgacagtgacaaagttataaggttcatct |
390 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2151205 |
atgtgaaataattcgaaggctcgagcaaaatccttgacagtgacaaagttataaggttcatct |
2151267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 148 - 390
Target Start/End: Original strand, 2163303 - 2163545
Alignment:
| Q |
148 |
acttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcagctccttcttgttaatcccat |
247 |
Q |
| |
|
||||| ||| ||||||| |||| |||||| ||||||| |||||||||||| || |||||||||||||||||| | || |||||||||||||||| || | |
|
|
| T |
2163303 |
acttgagtgactttgaaaatgtggacaaacgaatttcgcttcataagcaaaaattctctgctagcacaagccttcagaagctccttcttgttaacaccgt |
2163402 |
T |
|
| Q |
248 |
atttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcctacgtgaaataattcgaaggc |
347 |
Q |
| |
|
||||||||||| |||||||| ||| ||| |||| ||||||||||| |||| ||| ||||| |||||||||| || |||| |||||||| | || || |
|
|
| T |
2163403 |
atttctttgtggtcaagacacttgcatggcatttcgacttgtcaaaaggattggctagctcatctccaagtttttgacctatgtgaaatatctgaaatgc |
2163502 |
T |
|
| Q |
348 |
tcgagcaaaatccttgacagtgacaaagttataaggttcatct |
390 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2163503 |
ttcggcaaaatccttgacagtaacaaaactataaggttcatct |
2163545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 186 - 319
Target Start/End: Complemental strand, 4302604 - 4302471
Alignment:
| Q |
186 |
cttcataagcaataactctctgctagcacaagcccttagcagctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagac |
285 |
Q |
| |
|
|||||||||||| || ||| | |||||||||||| | || ||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
4302604 |
cttcataagcaaaaattctatactagcacaagccttcagaagctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagat |
4302505 |
T |
|
| Q |
286 |
ttgtcaaatggatcggccagctcttctccaagtt |
319 |
Q |
| |
|
|| ||||| |||| ||| ||||| |||||||||| |
|
|
| T |
4302504 |
ttttcaaaaggattggctagctcatctccaagtt |
4302471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University