View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_27 (Length: 397)
Name: NF3107_low_27
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 160 - 387
Target Start/End: Original strand, 54936314 - 54936537
Alignment:
| Q |
160 |
agactttgatcttgaatttgaaacacacaacatttatcttaaaatggtagccgttggatctatttgggagttggaatggaccatatagggctttccagtt |
259 |
Q |
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| T |
54936314 |
agactttgatcttgaatttgaaacacacaacatttatcttaaaatggtagccgttggatctatttgggagttggaatcg----tatagggctttccagtt |
54936409 |
T |
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| Q |
260 |
cccactccaaccattttaattttcgacattattacgtacacgtcatggcaactaaactttcacatatgccacaaccagaggatctatgactatatatagt |
359 |
Q |
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| T |
54936410 |
cccactccaaccattttaattttcgacattattacgtacacgtcatggcaactaaactttcacatatgccacaaccagaggatctatgactatatatagt |
54936509 |
T |
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| Q |
360 |
actttgcttccaaatactctttcctatg |
387 |
Q |
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| T |
54936510 |
actttgcttccaaatactctttcctatg |
54936537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 54936145 - 54936274
Alignment:
| Q |
1 |
ccacgtgaaacctccgtaaaagcatctataacatcctaaaaacttgacaactacttctaccctgagagtaactaattgaaaagatcgcaacaagaaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54936145 |
ccacgtgaaacctccgtaaaagcatctataacatcctaaaaacttgacaactacttttaccctgagagtaactaattgaaaagatcgcaacaagaaattt |
54936244 |
T |
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| Q |
101 |
gaggtagaggtaaggttacattgacaccaa |
130 |
Q |
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| T |
54936245 |
gaggtagaggtaaggttacattgacaccaa |
54936274 |
T |
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