View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_low_28 (Length: 392)
Name: NF3107_low_28
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_28 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 27)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 78 - 382
Target Start/End: Original strand, 11048548 - 11048852
Alignment:
| Q |
78 |
caattgtactagtattgccatcggtggctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048548 |
caattgtactagtattgccatcggtggctgagacaagttttgcaatgccaaaatcactcacatgagcaaccatgtcgtcgttaagaagaacattacttgg |
11048647 |
T |
|
| Q |
178 |
ctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtcc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11048648 |
ctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatcaccaaggtcc |
11048747 |
T |
|
| Q |
278 |
aatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcac |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11048748 |
aatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagtgctttaaattcttcac |
11048847 |
T |
|
| Q |
378 |
ctttg |
382 |
Q |
| |
|
||||| |
|
|
| T |
11048848 |
ctttg |
11048852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 106 - 382
Target Start/End: Original strand, 10216668 - 10216944
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||| ||||||||||||| || || ||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
10216668 |
tgagacaaatgttgctatgccaaaatcactcacatgagcaaccatgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgc |
10216767 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216768 |
tcacattcttgatgcagataatgtaatgccgaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
10216867 |
T |
|
| Q |
306 |
tctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
10216868 |
tctcaggatgcaaccattgttctaagcttccatttttcatgtaataaaaaactagagctttaaattcttgacctttg |
10216944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 78 - 369
Target Start/End: Original strand, 10746906 - 10747197
Alignment:
| Q |
78 |
caattgtactagtattgccatcggtggctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgc |
177 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||||||| || | |||||| ||||| |||| |
|
|
| T |
10746906 |
caattgtactagtattgccactagtggctgagacaagttttgctatgccaaaatcagtcacatgagcaaccatgtcatcatcaagaaggacattgcttgg |
10747005 |
T |
|
| Q |
178 |
ctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtcc |
277 |
Q |
| |
|
||| |||||||| ||||| | ||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| || || |||||||| |
|
|
| T |
10747006 |
cttgagatcacagtgaatgactaattgctcacattcttggtgaagataatgtaatgttgaagcaacatcgataatgatgtttaatctgtggccaaggtct |
10747105 |
T |
|
| Q |
278 |
aatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaa |
369 |
Q |
| |
|
|| ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
10747106 |
aacgtttttggatgctcttcatttaaaaactcaggatgcaaccattgttctaagcttccattttttatgtaataaaaaactagagctttaaa |
10747197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 107 - 369
Target Start/End: Original strand, 10716860 - 10717122
Alignment:
| Q |
107 |
gagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgct |
206 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||||||||||||| || | |||||| ||||| |||| ||| |||||||||||||| || ||||| | |
|
|
| T |
10716860 |
gagacaagttttgctatgccaaaatcagtcacatgagcaaccatgtcatcatcaagaaggacattgcttggcttaagatcacaatgaatgattaattgtt |
10716959 |
T |
|
| Q |
207 |
cacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaat |
306 |
Q |
| |
|
|||||||||| || |||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
10716960 |
cacattcttggtgaagataatgtaatgcagtggcgacatcgatcatgatgtttaatctatgaccaaggtccaatgttcttggatgatctgcatttaaaat |
10717059 |
T |
|
| Q |
307 |
ctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaa |
369 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10717060 |
ctcaagatgcaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaa |
10717122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 107 - 382
Target Start/End: Complemental strand, 10605041 - 10604766
Alignment:
| Q |
107 |
gagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgct |
206 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||| |||||||||| || || | ||| || ||||| |||| |||||||||||||||||| | ||||||| |
|
|
| T |
10605041 |
gagaccagtcttgctatgccaaaatcactcacatgagcaaccatatcatcatcaagtaggacattgcttggctttagatcacaatgaatgactaattgct |
10604942 |
T |
|
| Q |
207 |
cacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaat |
306 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| | ||||||||| || || | |||||||||||| ||| ||||| |||||| ||||||||| |
|
|
| T |
10604941 |
cacattcttgatgaagataatgcaatgcagaagcaacatcaaaaatgatgttaaatcttttaccaaggtccaacgttgttggaggctctgcatttaaaat |
10604842 |
T |
|
| Q |
307 |
ctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10604841 |
ctcaggatgcaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttgacctttg |
10604766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 102 - 369
Target Start/End: Original strand, 10740614 - 10740881
Alignment:
| Q |
102 |
tggctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaa |
201 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| ||||||||||||| || | |||||| ||||| |||| ||||||||||||||||| | ||| |
|
|
| T |
10740614 |
tggctgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaa |
10740713 |
T |
|
| Q |
202 |
ttgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaattt |
301 |
Q |
| |
|
||| ||||||||||| || |||||||||||||||| || |||||| | ||||||||||| ||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
10740714 |
ttgttcacattcttggtgaagataatgtaatgcagtggcgacatcgttcatgatgtttaatctatgaccaaggtccaatgttcttggatgatctgcattt |
10740813 |
T |
|
| Q |
302 |
aaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaa |
369 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10740814 |
aaaatctcaagatgcaaccattgttctaagcttccatttttcatgtaatcaaaaacaagagctttaaa |
10740881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 104 - 382
Target Start/End: Complemental strand, 10565319 - 10565041
Alignment:
| Q |
104 |
gctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaatt |
203 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||||| ||||||||||||| |||| |||||| | ||| |||| |||||||||||||||||| | ||||| |
|
|
| T |
10565319 |
gctgagacgagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggatattgcttggctttagatcacaatgaatgaccaatt |
10565220 |
T |
|
| Q |
204 |
gctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaa |
303 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||| |||||| ||| |||||||||| |||| | |||| |||||| |
|
|
| T |
10565219 |
cttcacattctctatgaagataatgtaatgcagaagcaacatcgataataatgtataatctatgagcaaagtccaatgttgttgggggttctgcatttaa |
10565120 |
T |
|
| Q |
304 |
aatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
10565119 |
aatctcaggatgcaaccattgatctaagcttccatttttcatgtactcaaaaaccagagctttaaattcttgacctttg |
10565041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 102 - 382
Target Start/End: Complemental strand, 10612004 - 10611724
Alignment:
| Q |
102 |
tggctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaa |
201 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||||||| | |||||||| || || | ||| || ||||| |||| ||||| ||||||||||| | ||| |
|
|
| T |
10612004 |
tggccgagacaagtcttgctatgccaaaatcactcacatgtgcaaccatatcatcatcaagtaggacattgcttggctttatatcacaatgaaggaccaa |
10611905 |
T |
|
| Q |
202 |
ttgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaattt |
301 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||| || ||||||| |||| |
|
|
| T |
10611904 |
ttgctcacattcattatgaagataatgtaatgcagaaccaacatccataatgatgtttaatctatgactgaggtccaatgttgctgtatgctcttcattt |
10611805 |
T |
|
| Q |
302 |
aaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
10611804 |
aaaaccttgggatgcaaccattgttctaagcttccatttttcatgtaatcaaaaactagggctttaaattcttgacctttg |
10611724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 105 - 381
Target Start/End: Original strand, 10588348 - 10588624
Alignment:
| Q |
105 |
ctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattg |
204 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| ||||||||||||| |||| |||||| || || |||| ||||| ||||||||||| | || || |
|
|
| T |
10588348 |
ctgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacgttgcttggctttatatcacaatgaaggaccacctg |
10588447 |
T |
|
| Q |
205 |
ctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaa |
304 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||||||| ||||||| |||| ||||| |||||| |||||||||| ||| |||||||||||||||| | | |
|
|
| T |
10588448 |
ctcacattcatgatgaagataatgtagtgcagaagcaatatcgatagtgatatttaatctatgaacaaggtccaacgttcttggatgctctgaattcaca |
10588547 |
T |
|
| Q |
305 |
atctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcaccttt |
381 |
Q |
| |
|
|| ||||| | |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
10588548 |
ttccatggatgaagccattgttctaaacttccatttttcatgtaatcaaaaactaaagctttaaattcttgaccttt |
10588624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 125 - 381
Target Start/End: Original strand, 10763071 - 10763327
Alignment:
| Q |
125 |
ccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagat |
224 |
Q |
| |
|
||||||||||||||| ||||||||||||| || | |||||| ||||| |||| ||||||||||||||||| | |||||||||||||||| |||| |||| |
|
|
| T |
10763071 |
ccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagat |
10763170 |
T |
|
| Q |
225 |
aatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattg |
324 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || | || ||| |||| ||||||||| ||||| ||||| ||||||| || ||| || | |||| | |
|
|
| T |
10763171 |
aatgtaatgcagaagcaacatcaataatgatattcagtctttgatcaagatccaatgttgttggagtctctgcatttaaattcctagggtgcagccatcg |
10763270 |
T |
|
| Q |
325 |
ttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcaccttt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
10763271 |
ttctaagcttccatttttcatgtaatcaaaaaccagagctttaaattcttgaccttt |
10763327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 173 - 374
Target Start/End: Complemental strand, 10581226 - 10581026
Alignment:
| Q |
173 |
cttgcctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaa |
272 |
Q |
| |
|
|||| ||||||||||||| ||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
10581226 |
cttggctttagatcacaacgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatccataatgatgtttaatctatgaccaa |
10581127 |
T |
|
| Q |
273 |
ggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattc |
372 |
Q |
| |
|
||| ||||||| || || | |||| | || |||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10581126 |
ggttcaatgttgttagaggttctgcactt-aaatctgaggatgcaaccattgttctaagcttccatttttcatgtaataaaaaactaaagctttaaattc |
10581028 |
T |
|
| Q |
373 |
tt |
374 |
Q |
| |
|
|| |
|
|
| T |
10581027 |
tt |
10581026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 110 - 382
Target Start/End: Original strand, 19605788 - 19606060
Alignment:
| Q |
110 |
acaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgctcac |
209 |
Q |
| |
|
|||||| |||| |||||||||||||||||| | ||||| || ||||||| || ||| ||||| |||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
19605788 |
acaagtcttgctatgccaaaatcactcacatgtgcaacgatatcgtcgtcaataaggacattgcttggctttagatcacaatgaaggaccaattgctcac |
19605887 |
T |
|
| Q |
210 |
attcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctc |
309 |
Q |
| |
|
|||| ||||| || |||||||||||||||| |||||||| || ||| ||||| || || ||| | ||||||| ||||||| |||| ||| | || | |
|
|
| T |
19605888 |
attcatgatgaaggtaatgtaatgcagaagaaacatcgacaaggatatttaatctttgctcaaacttcaatgttcttggatgatctgcattcattgtccc |
19605987 |
T |
|
| Q |
310 |
aggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
19605988 |
gggatgcaaccattgttctaagcttccatttctcatgtactcaaaaactagagctttgaattctagacctttg |
19606060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 106 - 382
Target Start/End: Complemental strand, 10559192 - 10558916
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||| ||| |||| |||||||||||||||||| ||||||| |||| || | || ||| ||||| |||| ||||||||||||||||| | ||||||| |
|
|
| T |
10559192 |
tgagacgagtcttgctatgccaaaatcactcacatgagcaacattgtcttcatcaataaggacattgcttggctttagatcacaatgaaggaccaattgc |
10559093 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
305 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||| |||||||| || | || ||| ||| ||||||| | |||| |||||| ||| | | |
|
|
| T |
10559092 |
tcacattctcgatgaagataatgtaatgcagaagcaacatcaataatgatattcagtctttgattaagatccaatgctcttggttgctctacattcatca |
10558993 |
T |
|
| Q |
306 |
tctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|| | ||| ||||| | |||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||| |
|
|
| T |
10558992 |
tccttgaatgcaaccagttttctaagcttccatttttcatgtattcaaaaactagagctttgaattcctgacctttg |
10558916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 105 - 382
Target Start/End: Complemental strand, 7193296 - 7193019
Alignment:
| Q |
105 |
ctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattg |
204 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| ||||||||||||| |||| |||||| ||||| |||| |||||||||||||||||| ||| |||| |
|
|
| T |
7193296 |
ctgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggctttagatcacaatgaatgatcgattg |
7193197 |
T |
|
| Q |
205 |
ctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaattta-a |
303 |
Q |
| |
|
||||||||| |||| || ||||||||| || | |||| ||| | | ||| || || || ||| |||||||||| ||| || ||| |||| ||| | |
|
|
| T |
7193196 |
ctcacattcaagatgaaggtaatgtaatacaaaggcaatatcaacagcgatattcaatctttgatcaaggtccaacgttctttgattctctacattcact |
7193097 |
T |
|
| Q |
304 |
aatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| || |||||||| ||||| |||| |||||||||||||| ||||||| |
|
|
| T |
7193096 |
gatct-aggatgtagccattgttctaagcttccgttgttcatgtattcaaagactaaagctttaaattcttgacctttg |
7193019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 10652117 - 10652257
Alignment:
| Q |
102 |
tggctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaa |
201 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| |||||||||||||||| | |||||| |||||||||| |||||||||||||||||| | | |
|
|
| T |
10652117 |
tggctgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcgtcatcaagaaggacattacttggctttagatcacaatgaatgaccgc |
10652216 |
T |
|
| Q |
202 |
ttgctcacattcttgatgcagataatgtaatgcagaagcaa |
242 |
Q |
| |
|
|||||||||||| ||||| || ||||||||| ||||||||| |
|
|
| T |
10652217 |
ttgctcacattcatgatgaaggtaatgtaatacagaagcaa |
10652257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 102 - 381
Target Start/End: Original strand, 9836243 - 9836522
Alignment:
| Q |
102 |
tggctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaa |
201 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||| |||||||||||| || | ||||| | || |||| ||| | |||||||||||| | || |
|
|
| T |
9836243 |
tggctgagataagtcttgctatgccaaaatcactcacgtgagcaaccatgttatcatcgagaaggatgttgcttggcttgatatcacaatgaatgaccac |
9836342 |
T |
|
| Q |
202 |
ttgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaattt |
301 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| ||| || ||| |||| || ||| |||||| ||||||| | |||| |||||||| |
|
|
| T |
9836343 |
ttgctcacattcacaatgaagataatgtaatgcagaagcaatatcaatggagatatttagtctttgaacaaggttcaatgttctaggatactctgaatcc |
9836442 |
T |
|
| Q |
302 |
aaaatctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcaccttt |
381 |
Q |
| |
|
| || |||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
9836443 |
actgtccagggataaagccattgttctaagcttccatttttcatgtaatcaaaaactaaagctttaaattctccaccttt |
9836522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 10660000 - 10660130
Alignment:
| Q |
102 |
tggctgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaa |
201 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| ||||||||||||| |||| |||||| |||||||||| |||||||||||||||||| | | |
|
|
| T |
10660000 |
tggctgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattacttggctttagatcacaatgaatgaccgc |
10660099 |
T |
|
| Q |
202 |
ttgctcacattcttgatgcagataatgtaat |
232 |
Q |
| |
|
|||||||||||| ||||| || ||||||||| |
|
|
| T |
10660100 |
ttgctcacattcgtgatgaaggtaatgtaat |
10660130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 11048364 - 11048418
Alignment:
| Q |
20 |
acgtggacacttcaaaacccattccatactctaaaacatgtagaaaaagttgttg |
74 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048364 |
acgtggacacttcagaacccattccatactctaaaacatgtagaaaaagttgttg |
11048418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 374
Target Start/End: Complemental strand, 9825261 - 9825122
Alignment:
| Q |
236 |
gaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttctaagcttc |
335 |
Q |
| |
|
||||||||||| |||||||| || || || ||| |||| ||||||||| | ||||||||| ||| ||| |||| ||||||||||||||||||| |
|
|
| T |
9825261 |
gaagcaacatcaataatgatattcaatctttgatcaagatccaatgttctaggatgctctacattctctatccttggattcaaccattgttctaagcttc |
9825162 |
T |
|
| Q |
336 |
c-atttttcatgtaatcaaaaactagagctttaaattctt |
374 |
Q |
| |
|
| ||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
9825161 |
ccattttgcatgtactcaaaaactagagctttgaattctt |
9825122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 10746727 - 10746773
Alignment:
| Q |
22 |
gtggacacttcaaaacccattccatactctaaaacatgtagaaaaag |
68 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
10746727 |
gtggacacttcagaacccattccatactctaaaacatgtagcaaaag |
10746773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 10740133 - 10740181
Alignment:
| Q |
25 |
gacacttcaaaacccattccatactctaaaacatgtagaaaaagttgtt |
73 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
10740133 |
gacacttcagaacccattccatactctaaaacatgcagcaaaagttgtt |
10740181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 9850832 - 9850879
Alignment:
| Q |
319 |
ccattgttctaagcttccatttttcatgtaatcaaaaactagagcttt |
366 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
9850832 |
ccattgttctaagcttccatttatcatgtactaaaaaactagagcttt |
9850879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 10605254 - 10605211
Alignment:
| Q |
25 |
gacacttcaaaacccattccatactctaaaacatgtagaaaaag |
68 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
10605254 |
gacacttcagaacccattccatactctgaaacatgtagaaaaag |
10605211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 10660209 - 10660280
Alignment:
| Q |
311 |
ggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||| ||||| |||| ||| ||||| |||| ||||||| |
|
|
| T |
10660209 |
ggatgtagccattgttctaggcttccattgttcatgtattcaaacactaaagccttaaactcttgacctttg |
10660280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 10716681 - 10716727
Alignment:
| Q |
22 |
gtggacacttcaaaacccattccatactctaaaacatgtagaaaaag |
68 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10716681 |
gtggacacttcagaacccattccatactctgaaacatgtagcaaaag |
10716727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 10762548 - 10762584
Alignment:
| Q |
25 |
gacacttcaaaacccattccatactctaaaacatgta |
61 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10762548 |
gacacttcagaacccattccatactctaaaacatgta |
10762584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 10216487 - 10216523
Alignment:
| Q |
25 |
gacacttcaaaacccattccatactctaaaacatgta |
61 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
10216487 |
gacacttcaacacccattccatactctaaaatatgta |
10216523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 106 - 382
Target Start/End: Complemental strand, 7583 - 7307
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||||||||| || | |||||| ||||| |||| ||||||||||||||||| || |||||| |
|
|
| T |
7583 |
tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttagatcacaatgaagtattaattgc |
7484 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
305 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |
|
|
| T |
7483 |
tcacattctcgatgaagttaatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttattggaggatttgcattcaaag |
7384 |
T |
|
| Q |
306 |
tctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
7383 |
tctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttg |
7307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 106 - 382
Target Start/End: Complemental strand, 12899860 - 12899584
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||||||||| || | |||||| ||||| |||| ||||| ||||||||||| | |||||| |
|
|
| T |
12899860 |
tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggctttatatcacaatgaaagactaattgc |
12899761 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
305 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |
|
|
| T |
12899760 |
tcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaag |
12899661 |
T |
|
| Q |
306 |
tctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
12899660 |
tctcgggatgtaaccattgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttg |
12899584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 106 - 382
Target Start/End: Complemental strand, 12932569 - 12932293
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||||||||| || | |||||| ||||| |||| |||||||||||||||| || || ||| |
|
|
| T |
12932569 |
tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggattaactgc |
12932470 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
305 |
Q |
| |
|
||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |
|
|
| T |
12932469 |
tcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaag |
12932370 |
T |
|
| Q |
306 |
tctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
12932369 |
tctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagtgctttaaattcttgacctttg |
12932293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 106 - 374
Target Start/End: Complemental strand, 12948934 - 12948666
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||||||||| || | |||||| ||||| |||| |||||||||||||||| | |||||| |
|
|
| T |
12948934 |
tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggactaattgc |
12948835 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
305 |
Q |
| |
|
||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||| ||||| | | || ||| ||| |
|
|
| T |
12948834 |
tcacattatcgatgaagataatgtaatgcagaagcaacatcgataatgatgtttaatctacgacgaaggttcaatgttgttggaggatttgcattcaaag |
12948735 |
T |
|
| Q |
306 |
tctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattctt |
374 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12948734 |
tctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattctt |
12948666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 106 - 382
Target Start/End: Complemental strand, 12907480 - 12907204
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| | ||||||||||||| || | |||||| ||||| |||| |||||||||||||| | || || ||| |
|
|
| T |
12907480 |
tgagacaagtcttgctatgccaaaatcactcaaatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatggaggattaactgc |
12907381 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
305 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||| ||||| | | || ||| ||| |
|
|
| T |
12907380 |
tcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctaagaccaaggttcaatgttgttggaggatttgcattcaaag |
12907281 |
T |
|
| Q |
306 |
tctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
12907280 |
tttcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttg |
12907204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 106 - 382
Target Start/End: Complemental strand, 12958368 - 12958092
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||| ||||||||||||| | | |||||| ||||| |||| |||||||||||| |||| || || ||| |
|
|
| T |
12958368 |
tgagacaagtcttgctattccaaaatcactcacatgagcaaccatgtcaccatcaagaaggacattgcttggctttagatcacagtgaaggattaactgc |
12958269 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatg-ctctgaatttaaa |
304 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | ||| | ||| ||| |
|
|
| T |
12958268 |
tcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggactc-gcattcaaa |
12958170 |
T |
|
| Q |
305 |
atctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|| | |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
12958169 |
atttgaggatgtaaccactgttctaagcttccattttccatgtattcaaaaactagagctttaaattcttgacctttg |
12958092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 106 - 382
Target Start/End: Original strand, 17923322 - 17923598
Alignment:
| Q |
106 |
tgagacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgc |
205 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| ||||||||||||| || | |||||| ||||| |||| |||||||||||||||| || || ||| |
|
|
| T |
17923322 |
tgagacaagtcttgctatgccaaaatcactcacatgagcaaccatgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggattaactgc |
17923421 |
T |
|
| Q |
206 |
tcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaa |
305 |
Q |
| |
|
||||||||| |||| || ||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |
|
|
| T |
17923422 |
tcacattctcgatgaaggtaatgcaatgcagaagcaacatcgatgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaag |
17923521 |
T |
|
| Q |
306 |
tctcaggatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaattcttcacctttg |
382 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
17923522 |
tctcaggatgtaaccactgttctaagcttccatttttcatgtattcaaaaactagagctttaaattcttgacctttg |
17923598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 39875829 - 39875899
Alignment:
| Q |
124 |
gccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaa |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||||| ||||| |||| |||| ||||||||||| |
|
|
| T |
39875829 |
gccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggttttaaatcacaatgaa |
39875899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 39883952 - 39884022
Alignment:
| Q |
124 |
gccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaa |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||||| ||||| |||| |||| ||||||||||| |
|
|
| T |
39883952 |
gccaaaatcactcacatgagcaaccatgtcatcgtcaagaaggacattgcttggttttaaatcacaatgaa |
39884022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 39890906 - 39890976
Alignment:
| Q |
124 |
gccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaa |
194 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || | |||||| ||||| |||| |||| ||||||||||| |
|
|
| T |
39890906 |
gccaaaatcactcacatgagcaaccatgtcatcttcaagaaggacattgcttggttttaaatcacaatgaa |
39890976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 39898820 - 39898877
Alignment:
| Q |
312 |
gatgtaaccattgttctaagcttccatttttcatgtaatcaaaaactagagctttaaa |
369 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
39898820 |
gatgcaaccattcctctaagcttccatttgtcatgtattcaaaaactattgctttaaa |
39898877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 264
Target Start/End: Original strand, 31467091 - 31467239
Alignment:
| Q |
116 |
tttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaataatcaattgctcacattctt |
215 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||| || | ||||||||| || || | ||||| |||||||||||| | ||||| |||||| | |
|
|
| T |
31467091 |
tttgctatgccaaaatcactcacatgagctaccatagaatcatcaagaagaacgttgctaggctttaaatcacaatgaatgacaggttgctgacattcat |
31467190 |
T |
|
| Q |
216 |
gatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacct |
264 |
Q |
| |
|
|||| |||||||| ||||| |||||||| || ||||| || |||||||| |
|
|
| T |
31467191 |
gatgaagataatgaaatgccgaagcaacgtcaataataatatttaacct |
31467239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 31467300 - 31467349
Alignment:
| Q |
325 |
ttctaagcttccatttttcatgtaatcaaaaactagagctttaaattctt |
374 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
31467300 |
ttctaagcttccgtttttcatgtactcgaaaacaagagctttaaattctt |
31467349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 28605894 - 28605824
Alignment:
| Q |
125 |
ccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatgaat |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||| | | |||||||| ||| |||| ||||| |||||||||||| |
|
|
| T |
28605894 |
ccaaaatcactcacatgagcaaccatgtcattatgaagaagaatattgcttggctttaaatcacaatgaat |
28605824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 27723977 - 27724061
Alignment:
| Q |
108 |
agacaagttttgcaatgccaaaatcactcacaagagcaaccatgtcgtcgttaagaagaacattacttgcctttagatcacaatg |
192 |
Q |
| |
|
||||||||||||| | ||||||||||| ||| ||||||||||||| | || |||||||| ||| ||| |||| ||||||||| |
|
|
| T |
27723977 |
agacaagttttgctagtccaaaatcactaacacgagcaaccatgtcattgtcaagaagaatgttatttggttttaaatcacaatg |
27724061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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