View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_low_31 (Length: 385)

Name: NF3107_low_31
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_low_31
NF3107_low_31
[»] chr1 (6 HSPs)
chr1 (18-377)||(40689554-40689913)
chr1 (73-125)||(34714059-34714111)
chr1 (191-255)||(34710335-34710399)
chr1 (191-255)||(34713959-34714023)
chr1 (183-223)||(27509163-27509203)
chr1 (191-255)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (172-248)||(7687870-7687946)
chr7 (178-250)||(40243778-40243850)
[»] chr2 (2 HSPs)
chr2 (170-244)||(41234713-41234787)
chr2 (171-223)||(35505956-35506008)
[»] chr4 (1 HSPs)
chr4 (174-263)||(20926000-20926089)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 40689913 - 40689554
Alignment:
Q  18 accttagacttgttgttattgttgcttccaccatgtagatttcccttaccattgttattcaattgaagggaaattgatttatgattgggtttgaattgaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40689913 accttagacttgttgttattgttgcttccaccatgtagatttcccttaccattgttattcaattgaagagaaattgatttatgattgggtttgaattgaa 40689814  T
Q  118 actcttgatcatcatcatataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689813 actcttgatcatcatcatataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatga 40689714  T
Q  218 agggaatgttctgttgcatgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatatttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689713 agggaatgttctgttgcatgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatatttt 40689614  T
Q  318 gtgtagttcatcattccaccatctaaatcatcggtgttctttgttgatgattcctttgct 377  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40689613 gtgtagttcatcattccaccatctaaatcatcagtgttctttgttgatgattcctttgct 40689554  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 34714111 - 34714059
Alignment:
Q  73 tattcaattgaagggaaattgatttatgattgggtttgaattgaaactcttga 125  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  34714111 tattcaatttaagggaaattgatttattattggttttgaattgaaactcttga 34714059  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 34710399 - 34710335
Alignment:
Q  191 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 255  Q
    ||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| |||| ||||    
T  34710399 tctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacat 34710335  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 34714023 - 34713959
Alignment:
Q  191 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 255  Q
    ||||||||| ||||| ||||||||||||| ||| ||| | ||||||||||||||| |||| ||||    
T  34714023 tctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacat 34713959  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 27509163 - 27509203
Alignment:
Q  183 tgacttgctctatggccaccaagggcttgaaatgaagggaa 223  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  27509163 tgacttgctctatgtccaccaagtgcttggaatgaagggaa 27509203  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 34406576 - 34406640
Alignment:
Q  191 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 255  Q
    ||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| ||||    
T  34406576 tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat 34406640  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 7687870 - 7687946
Alignment:
Q  172 ttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 248  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||  ||| || |||||||| ||||||    
T  7687870 ttggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca 7687946  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 40243778 - 40243850
Alignment:
Q  178 tcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcata 250  Q
    ||||||| || || ||||||||||||||||||||||| || | |||| || ||||||| ||||||||||||||    
T  40243778 tcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgcattcata 40243850  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 41234787 - 41234713
Alignment:
Q  170 ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca 244  Q
    ||||||| ||||||||||||||||||||||||| |  |||||||| |||| ||||  | ||||||||||||||||    
T  41234787 ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca 41234713  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 35506008 - 35505956
Alignment:
Q  171 tttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaa 223  Q
    |||||||||||||||||||||||||| ||||| |  |||||||||||| ||||    
T  35506008 tttggtttcttgtgacttgctctatgtccacccaacgcttgaaatgaatggaa 35505956  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 20926000 - 20926089
Alignment:
Q  174 ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca 263  Q
    ||||| ||||||||||| || || ||||| |  |||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||||||    
T  20926000 ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca 20926089  T

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