View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_34 (Length: 356)
Name: NF3107_low_34
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_34 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 26375158 - 26375001
Alignment:
| Q |
15 |
agaaaggacattttgtaatcatgaacatataatgatgattaaactttcatatgttaaaaatatttgctctgttga-cgtctaaacacatcaaaacaagca |
113 |
Q |
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| T |
26375158 |
agaaaggacattttgtaatcatgaacatataatgatgattaaactttcatatgttaaaaatatttgctctgttgaacgtctaagcacatcaaaacaagca |
26375059 |
T |
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| Q |
114 |
gataaactataatgtatccgattcattcaccttatcaatggaacctctattaataaga |
171 |
Q |
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| T |
26375058 |
gataaactataatgtatccgattcattcaccttatcaatggaacctctattaataaga |
26375001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 26374936 - 26374826
Alignment:
| Q |
236 |
gttttaatcttgtcatggtaaggaagaagggaaacaagcacacttggagagcacagtacaatggatagttgtatgctgcatctcatataaggttctcagg |
335 |
Q |
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| T |
26374936 |
gttttaatcttgtcatggtaaggaagaagggaaacaagcacacttggagagcacagtacaatggatagttgtatgctgcatctcatgtaaggttctcagg |
26374837 |
T |
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| Q |
336 |
gcggtcctttg |
346 |
Q |
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| T |
26374836 |
gcggtcctttg |
26374826 |
T |
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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 40519198 - 40519269
Alignment:
| Q |
244 |
cttgtcatggtaaggaagaagg-gaaacaagcacacttggagagcacagtacaatggatagttgtatgctgc |
314 |
Q |
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| T |
40519198 |
cttgtcatgggaaggaagaaggtgaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgc |
40519269 |
T |
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Target: scaffold0002 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 186245 - 186174
Alignment:
| Q |
244 |
cttgtcatggtaaggaagaaggg-aaacaagcacacttggagagcacagtacaatggatagttgtatgctgc |
314 |
Q |
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| T |
186245 |
cttgtcatgggaaggaagaaggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgc |
186174 |
T |
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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 491265 - 491336
Alignment:
| Q |
244 |
cttgtcatggtaaggaagaaggg-aaacaagcacacttggagagcacagtacaatggatagttgtatgctgc |
314 |
Q |
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| T |
491265 |
cttgtcatgggaaggaagaaggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgc |
491336 |
T |
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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 13222910 - 13222839
Alignment:
| Q |
244 |
cttgtcatggtaaggaagaaggg-aaacaagcacacttggagagcacagtacaatggatagttgtatgctgc |
314 |
Q |
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| T |
13222910 |
cttgtcatgggaaggaagaaggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgc |
13222839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 3856344 - 3856411
Alignment:
| Q |
244 |
cttgtcatggtaaggaagaaggg-aaacaagcacacttggagagcacagtacaatggatagttgtatg |
310 |
Q |
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| T |
3856344 |
cttgtcatggtaaggaagaaggggaaacaagcacacttggagagagcagtacaatggatagttgtatg |
3856411 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 34654593 - 34654664
Alignment:
| Q |
244 |
cttgtcatggtaaggaagaaggg-aaacaagcacacttggagagcacagtacaatggatagttgtatgctgc |
314 |
Q |
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|||||||||| |||||||||||| |||||||||||| |||||||| || ||||||||||||||||||||||| |
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| T |
34654593 |
cttgtcatgggaaggaagaaggggaaacaagcacacatggagagcgcaatacaatggatagttgtatgctgc |
34654664 |
T |
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