View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_low_36 (Length: 347)

Name: NF3107_low_36
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_low_36
NF3107_low_36
[»] chr8 (2 HSPs)
chr8 (21-336)||(23190938-23191253)
chr8 (147-303)||(25861260-25861417)
[»] chr2 (3 HSPs)
chr2 (54-309)||(43155223-43155482)
chr2 (54-309)||(38254060-38254319)
chr2 (147-327)||(39649275-39649457)
[»] chr6 (2 HSPs)
chr6 (54-309)||(19308936-19309195)
chr6 (147-309)||(10125239-10125402)
[»] chr1 (4 HSPs)
chr1 (54-309)||(11472547-11472806)
chr1 (147-303)||(7283193-7283350)
chr1 (147-303)||(10466590-10466747)
chr1 (147-303)||(43736242-43736399)
[»] chr7 (1 HSPs)
chr7 (70-309)||(37164127-37164370)
[»] chr5 (2 HSPs)
chr5 (147-309)||(25380645-25380808)
chr5 (231-309)||(17514249-17514328)
[»] chr3 (1 HSPs)
chr3 (147-303)||(5909787-5909944)


Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 21 - 336
Target Start/End: Complemental strand, 23191253 - 23190938
Alignment:
Q  21 acagtagtgttgcaccaacaattattgaccccttatagtggttgaaaccaaaaaacaaagcaagtggtctattcacatggttcgtacaatatgtagtgac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23191253 acagtagtgttgcaccaacaattattgaccccttatagtggttgaaaccaaaaaacaaagcaagtggtctattcacatggttcgtacaatatgtagtgac 23191154  T
Q  121 aatgcacaacatcgtctaaataaatcaatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23191153 aatgcacaacatcgtctaaataaatcaatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatga 23191054  T
Q  221 aagagagacagattctccacaattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgcattagtgtagtt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23191053 aagagagacagattctccacaattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgcattagtgtagtt 23190954  T
Q  321 ttatacacccgttcat 336  Q
    || |||||||||||||    
T  23190953 ttttacacccgttcat 23190938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 303
Target Start/End: Complemental strand, 25861417 - 25861260
Alignment:
Q  147 aatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcc-acaattg 245  Q
    ||||||||||||||||| ||||| |||| ||  ||||||   | ||||| | || |||||||| |||||||| |||||  ||| |||||||| |||| |     
T  25861417 aatccaaaatcatatttgcatcacaccagaacacatttgtaatctgttcatctatatccatctgatatgcataaaagaaggacggattctccaacaacta 25861318  T
Q  246 ttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttctt 303  Q
    | |||||||||| | |||||   ||||| | ||| | |||||||||||||||| ||||    
T  25861317 tcgttgaaaatactgtgaaagatatccagcatcaccatacaccatacttctttgtctt 25861260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 43155482 - 43155223
Alignment:
Q  54 tatagtggttgaaaccaaaaaacaaagcaagtggtctattcacatggttcgtacaatatgtagtgac--aatgcacaacatcgtctaaataa--atcaat 149  Q
    |||| |||||||||||| |||| |||||||||||||||||  ||| ||| ||||| ||||| ||| |  ||   ||||||||| | |||||   || |||    
T  43155482 tataatggttgaaaccagaaaaaaaagcaagtggtctattggcatagttggtacagtatgtggtgtccaaagaaacaacatcgccaaaatacccat-aat 43155384  T
Q  150 ccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcca-caattgttg 248  Q
    |||||||||| | | ||||| |||||||  ||||||   | ||||| | ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| |    
T  43155383 ccaaaatcatctgtgcatcacaccaaaacacatttgtaatatgttcttctacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcg 43155284  T
Q  249 ttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgca 309  Q
    ||||||||||| |||||  ||||||| |||| | ||  |||||||||||||||||||||||    
T  43155283 ttgaaaatattttgaaagacatccaatctcaccatatgccatacttctttttcttcttgca 43155223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 38254060 - 38254319
Alignment:
Q  54 tatagtggttgaaaccaaaaaacaaagcaagtggtctattcacatggttcgtacaatatgtagtgac--aatgcacaacatcgtctaaataaatc-aatc 150  Q
    |||| |||||||||||| |||| |||||||||||||||||  ||| ||| ||||| ||||| ||| |  ||   ||||||||| | |||||     ||||    
T  38254060 tataatggttgaaaccagaaaaaaaagcaagtggtctattggcatagttggtacagtatgtggtgtccaaagaaacaacatcgccaaaatacccgtaatc 38254159  T
Q  151 caaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcca-caattgttgt 249  Q
    ||||||||| | | ||||| |||||||  ||||||   | ||||| | ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| ||    
T  38254160 caaaatcatctgtgcatcacaccaaaacacatttgtaatatgttcttctacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgt 38254259  T
Q  250 tgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgca 309  Q
    |||||||||| |||||  ||||||| |||| | ||  |||||||||||||||||||||||    
T  38254260 tgaaaatattttgaaagacatccaatctcaccatatgccatacttctttttcttcttgca 38254319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 327
Target Start/End: Complemental strand, 39649457 - 39649275
Alignment:
Q  147 aatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcca-caattg 245  Q
    ||||||||||||||||| ||||| ||| ||   ||||||   ||||||| | |  |||||||| ||||||||||||||  ||   |||||||| | | |     
T  39649457 aatccaaaatcatatttgcatcacacctaatcacatttgtaatttgttcttctgtatccatctgatatgcatgaaagaaggatgtattctccaacgacta 39649358  T
Q  246 ttgttgaaaatattatgaaatgcatccaacctcatc-gtacaccatacttctttttcttcttgcattagtgtagttttataca 327  Q
    |||||||||||||| |||||  |||||||| ||| | ||||||||||||||||| |||| ||||| |  ||||||||| ||||    
T  39649357 ttgttgaaaatattttgaaagacatccaacatcacccgtacaccatacttctttgtctttttgcagtgatgtagttttttaca 39649275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 19308936 - 19309195
Alignment:
Q  54 tatagtggttgaaaccaaaaaacaaagcaagtggtctattcacatggttcgtacaatatgtagtgac--aatgcacaacatcgtctaaataaatc-aatc 150  Q
    |||| |||||||||||| |||| |||||||||||||||||  ||| ||| ||||| ||||| ||| |  ||   ||||||||| | |||||     ||||    
T  19308936 tataatggttgaaaccagaaaaaaaagcaagtggtctattggcatagttggtacagtatgtggtgtccaaagaaacaacatcgccaaaatacccgtaatc 19309035  T
Q  151 caaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcca-caattgttgt 249  Q
    ||||||||| | | ||||| |||||||  ||||||   | ||||| | ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| ||    
T  19309036 caaaatcatctgtgcatcacaccaaaacacatttgtaatatgttcttctacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgt 19309135  T
Q  250 tgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgca 309  Q
    |||||||||| |||||  ||||||| |||| | ||  |||||||||||||||||||||||    
T  19309136 tgaaaatattttgaaagacatccaatctcaccatatgccatacttctttttcttcttgca 19309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 309
Target Start/End: Original strand, 10125239 - 10125402
Alignment:
Q  147 aatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcca-caattg 245  Q
    ||||||||||||| | | ||||| |||||||  ||||||   | ||||| | ||||||||||| ||||||||||||||  ||  ||||||||| ||||||    
T  10125239 aatccaaaatcatctgtgcatcacaccaaaacacatttgtaatatgttcttctacatccatctgatatgcatgaaagaaggatggattctccaacaattg 10125338  T
Q  246 ttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgca 309  Q
    | ||||||| |||| |||||  ||||||| |||| | ||  |||||||||||||||||||||||    
T  10125339 tcgttgaaattattgtgaaagacatccaatctcaccatatgccatacttctttttcttcttgca 10125402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 11472806 - 11472547
Alignment:
Q  54 tatagtggttgaaaccaaaaaacaaagcaagtggtctattcacatggttcgtacaatatgtagtgac--aatgcacaacatcgtctaaataaatc-aatc 150  Q
    |||| |||||||||||| |||| |||||||||||||||||  ||| ||| ||||| ||||| ||| |  ||   ||||||||| | |||||     ||||    
T  11472806 tataatggttgaaaccagaaaaaaaagcaagtggtctattggcatagttggtacagtatgtggtgtccaaagaaacaacatcgccaaaatacccgtaatc 11472707  T
Q  151 caaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcca-caattgttgt 249  Q
    ||||||||| | | ||||| |||||||  ||||||   | ||||| | ||||||||||| ||||||||||||||  ||  ||||||||| ||||||| ||    
T  11472706 caaaatcatctgtgcatcacaccaaaacacatttgtaatatgttcttctacatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgt 11472607  T
Q  250 tgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgca 309  Q
    |||||||||| |||||  ||||||| |||| | ||  |||||||||||||||||||||||    
T  11472606 tgaaaatattttgaaagacatccaatctcaccatatgccatacttctttttcttcttgca 11472547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 303
Target Start/End: Original strand, 7283193 - 7283350
Alignment:
Q  147 aatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcc-acaattg 245  Q
    ||||||||||||||||| ||||| |||| ||  ||||||   ||||||| | || |||||||| |||||||| |||||  ||| |||||||| |||| ||    
T  7283193 aatccaaaatcatatttgcatcacaccagaacacatttgtaatttgttcatctatatccatctgatatgcataaaagaaggacggattctccaacaactg 7283292  T
Q  246 ttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttctt 303  Q
    | |||||||||| | |||||   ||||| | ||| | |||||||||||||||| ||||    
T  7283293 tcgttgaaaatactgtgaaagatatccagcatcaccatacaccatacttctttgtctt 7283350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 303
Target Start/End: Original strand, 10466590 - 10466747
Alignment:
Q  147 aatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcc-acaattg 245  Q
    ||||||||||||||||| ||||| |||| ||  ||||||   | ||||| | || |||||||| |||||||| |||||  ||| |||||||| |||| ||    
T  10466590 aatccaaaatcatatttgcatcacaccagaacacatttgtaatctgttcatctatatccatctgatatgcataaaagaaggacggattctccaacaactg 10466689  T
Q  246 ttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttctt 303  Q
    | |||||||||| | |||||   ||||| | ||| | |||||||||||||||| ||||    
T  10466690 tcgttgaaaatactgtgaaagatatccagcatcaccatacaccatacttctttgtctt 10466747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 303
Target Start/End: Original strand, 43736242 - 43736399
Alignment:
Q  147 aatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcc-acaattg 245  Q
    ||||||||||||||||| ||||| |||| ||  ||||||   | ||||| | || |||||||| |||||||| |||||  ||| |||||||| |||| ||    
T  43736242 aatccaaaatcatatttgcatcacaccagaacacatttgtaatctgttcatctatatccatctgatatgcataaaagaaggacggattctccaacaactg 43736341  T
Q  246 ttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttctt 303  Q
    | |||||||||| | |||||   ||||| | ||| | |||||||||||||||| ||||    
T  43736342 tcgttgaaaatactgtgaaagatatccagcatcaccatacaccatacttctttgtctt 43736399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 309
Target Start/End: Complemental strand, 37164370 - 37164127
Alignment:
Q  70 aaaaaacaaagcaagtggtctattcacatggttcgtacaatatgtagtgac-aatg-cacaacatcgtctaaata-aatcaatccaaaatcatattttca 166  Q
    |||||| |||||||||||||||||  ||||||| ||||||||||| ||| | ||||  ||||||||  | |||||     ||||||||||||||  | ||    
T  37164370 aaaaaaaaaagcaagtggtctattggcatggttggtacaatatgtggtgtctaatgaaacaacatcaccaaaatacccgtaatccaaaatcatacgtgca 37164271  T
Q  167 tcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcc-acaattgttgttgaaaatattatgaaa 265  Q
    ||| |||||||  ||||||   ||||||| |   ||||||||| ||||||||||||||  ||  |||||||| |||||||| |||||||||||| |||||    
T  37164270 tcacaccaaaacacatttgtaatttgttctttggcatccatctgatatgcatgaaagaaggatggattctccaacaattgtcgttgaaaatattgtgaaa 37164171  T
Q  266 tgcatccaacctcatcgtacaccatacttctttttcttcttgca 309  Q
      ||||||| |||| | ||| ||||||||||||||||| |||||    
T  37164170 gacatccaatctcaccatacgccatacttctttttctttttgca 37164127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 25380808 - 25380645
Alignment:
Q  147 aatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcca-caattg 245  Q
    ||||||||||||| | | ||||| |||||||  ||||||   | ||||| | |||||| |||| ||||||||||||||  ||  ||||||||| ||||||    
T  25380808 aatccaaaatcatctgtgcatcacaccaaaacacatttgtaatatgttcttctacatctatctgatatgcatgaaagaaggatggattctccaacaattg 25380709  T
Q  246 ttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgca 309  Q
    | ||||||||||||||||||  ||||||| |||| | ||  ||||| |  ||||||||||||||    
T  25380708 tcgttgaaaatattatgaaagacatccaatctcaccatatgccataatattttttcttcttgca 25380645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 17514249 - 17514328
Alignment:
Q  231 gattctcca-caattgttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttcttcttgca 309  Q
    ||||||||| ||||||| |||||||||||| |||||  ||||||| |||| | ||| ||||||||||||||||| |||||    
T  17514249 gattctccaacaattgtcgttgaaaatattgtgaaagacatccaatctcaccatacgccatacttctttttctttttgca 17514328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 303
Target Start/End: Complemental strand, 5909944 - 5909787
Alignment:
Q  147 aatccaaaatcatattttcatcataccaaaaagcatttggggtttgttcgtgtacatccatctcatatgcatgaaagagagacagattctcc-acaattg 245  Q
    ||||||||||||||||| ||||| |||| ||  ||||||   | ||||| | || |||||||| |||||||| |||||  ||| |||||||| |||| ||    
T  5909944 aatccaaaatcatatttgcatcacaccagaacacatttgtaatctgttcatctatatccatctgatatgcataaaagaaggacggattctccaacaactg 5909845  T
Q  246 ttgttgaaaatattatgaaatgcatccaacctcatcgtacaccatacttctttttctt 303  Q
    | |||||||||| | |||||   ||||| | ||| | |||||||||||||||| ||||    
T  5909844 tcgttgaaaatactgtgaaagatatccagcatcaccatacaccatacttctttgtctt 5909787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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