View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_38 (Length: 345)
Name: NF3107_low_38
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 36790233 - 36790545
Alignment:
| Q |
19 |
aactctgacatgtttgtcgcttccaaaagccttgtatgaactgagacaagctcctagatgctgtttttctcagcttctcaatgcgttgaagccatatagt |
118 |
Q |
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| T |
36790233 |
aactctgacatgtttgtcgcttccaaaagccttgtatgaactgagacaagctcctagatgctgtttttctcagcttctcaatgcgttgaagccatatagt |
36790332 |
T |
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| Q |
119 |
ttcagacattatagcctaactccaataccaacaaactaaaacaaccaaatcataaaatgaggatatggtggtaacttgtaaggaaggaaatacggtacat |
218 |
Q |
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| T |
36790333 |
ttcagacattatagcctaactccaataccaacaaactaaaacaaccaaatcataaaatgaggctatggtggtaacttgtaaggaaggaaatacggtacat |
36790432 |
T |
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| Q |
219 |
aattattcaaggaatgagtgtcaattatattgaggaactctctgattttggtcttgattaaattcatatgtcttatgtattattatacatgt----tttt |
314 |
Q |
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| T |
36790433 |
aattattcaaggaatgagtgtcaattatattgaggaactctctgattttggtcttgattaaattcatatgtcttatgtattattatacatgttttatttt |
36790532 |
T |
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| Q |
315 |
aagccattctgtg |
327 |
Q |
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| T |
36790533 |
aagccattctgtg |
36790545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 27094392 - 27094514
Alignment:
| Q |
122 |
agacattatagcctaactccaataccaacaaactaaaacaaccaaatcataaaatgaggatatggtggtaacttgtaaggaaggaaatacggtacataat |
221 |
Q |
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| T |
27094392 |
agacattgtagcctaactccaatactaacaa-ctaaaacaacaaaatcacataatgaggctatggtggtaacttgtaaggaa----atattgtacacaat |
27094486 |
T |
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| Q |
222 |
tattcaaggaatgagtgtcaattatatt |
249 |
Q |
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| T |
27094487 |
gattcaaggaatgagtgtcaattatatt |
27094514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 13805838 - 13805960
Alignment:
| Q |
122 |
agacattatagcctaactccaataccaacaaactaaaacaaccaaatcataaaatgaggatatggtggtaacttgtaaggaaggaaatacggtacataat |
221 |
Q |
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||||||||||||||||||| ||||| ||||| |||||||||| ||||| | ||||||| |||||||||||||||||||||| ||| ||||| ||| |
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| T |
13805838 |
agacattatagcctaactcaaatactaacaa-ctaaaacaacaaaatcgcataatgaggctatggtggtaacttgtaaggaa----atattgtacacaat |
13805932 |
T |
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| Q |
222 |
tattcaaggaatgagtgtcaattatatt |
249 |
Q |
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| T |
13805933 |
gattcaaggaatgagtgtcaattatatt |
13805960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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