View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_low_39 (Length: 338)
Name: NF3107_low_39
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 5434552 - 5434870
Alignment:
| Q |
18 |
ccttcatggaaagcaaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5434552 |
ccttcatggaaagcaaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacacca |
5434651 |
T |
|
| Q |
118 |
ttgacagctcatagtctaaattttccagggaga-----aaacatatcattaaagcttacaacagcttaagcataagatcacaatctagcaaggatgtgtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5434652 |
ttgacagctcatagtctaaattttccagggagaaaactaaacatatcattaaagcttacaacagcttaagcataagatcataatctagcaaggatgtgtt |
5434751 |
T |
|
| Q |
213 |
cttaagagccatatccaaaataagaatcaaacaaaagaaaccatg---aatacaataaaactttttataaacctcttattcttttgaagaatctagcctc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5434752 |
cttaagagccatatccaaaataagaatcaaacaaaagaaaccatgaataatacaataaaactttttccaaacctcttattcttttgaagaatctagcctc |
5434851 |
T |
|
| Q |
310 |
ctgttgtttccacaggttc |
328 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5434852 |
ctgttgtttccacaggttc |
5434870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 536151 - 536236
Alignment:
| Q |
57 |
agcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacaccattgacagctcatagtctaaattttc |
142 |
Q |
| |
|
||||||||||| ||| || ||||||||| ||| |||||| |||||||||||||||||||| ||| || |||||| ||||||||| |
|
|
| T |
536151 |
agcaaatatagcaaagagtctaaaacttcattgtttttagtgcagaaaaaccacaacacccttgccaaatcatagaataaattttc |
536236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 555385 - 555311
Alignment:
| Q |
32 |
aaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaa-cttaattctttttaatgcagaaaa |
105 |
Q |
| |
|
|||||||||| ||| |||||| | ||||||||| ||||| || |||||| ||| |||||||||||||||||||| |
|
|
| T |
555385 |
aaaatcagaagcaaacaacaaaggtagcaaatatggaaaacaggctaaaaacttcattctttttaatgcagaaaa |
555311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University