View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_41 (Length: 332)
Name: NF3107_low_41
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_41 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 18032413 - 18032230
Alignment:
| Q |
11 |
tgacatgaatatataggtgatgttaaaccattagcttgttggcttttgaaataaaaaagtggcgctagttggtgagaattttttagaatttttaaataga |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
18032413 |
tgacgtgaatatataggtgatgttaaaccattagcttgttggcttttgaaataaaaa-gtggcgctagttggtgggaattttttagaatttttaaataga |
18032315 |
T |
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| Q |
111 |
gtgctagtgtaagtgcaaaatggaagaaaacaaaatactggcgccaattagtgtgaaattttcagaattttaatagttaacttta |
195 |
Q |
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| T |
18032314 |
gtgctattgtaagtgcaaaatggaagaaaacaaagtactggtgccatttagtgtgaaattttcagaattttaatagttaacttta |
18032230 |
T |
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Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 141 - 323
Target Start/End: Original strand, 12844800 - 12844982
Alignment:
| Q |
141 |
caaaatactggcgccaattagtgtgaaattttcagaattttaatagttaactttagtaccaatgcagttggcaagtggaacgaggtcactaaatggaaaa |
240 |
Q |
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| T |
12844800 |
caaaatactggcgccatttagtgtgaaattttcagaattttaatagttaactttagtaccaatgcagttggcaagtggaacgaggtcactaaatggaaaa |
12844899 |
T |
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| Q |
241 |
gnnnnnnnnnggaggcggtgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
323 |
Q |
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| T |
12844900 |
gaaaaaaaaaggaggcgttgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
12844982 |
T |
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Target: scaffold0003 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 134 - 323
Target Start/End: Original strand, 45291 - 45475
Alignment:
| Q |
134 |
aagaaaacaaaatactggcgccaattagtgtgaaattttcagaattttaatagttaactttagtaccaatgcagttggcaagtggaacgaggtcactaaa |
233 |
Q |
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| T |
45291 |
aagaaaacaaaatactggcgccatttagtgtgaaattttcagaattttaatagttaactttagtaccaatgcagttggcaagtggaacgaggtcactaaa |
45390 |
T |
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| Q |
234 |
tggaaaag-nnnnnnnnnggaggcggtgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
323 |
Q |
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| T |
45391 |
tggaaaagaaaaaaaaaaggaggcgttgtcataaatatggtggtgtagt------tcttcattaaaaaagtacaattaatgtaagtataat |
45475 |
T |
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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 134 - 323
Target Start/End: Complemental strand, 27442070 - 27441886
Alignment:
| Q |
134 |
aagaaaacaaaatactggcgccaattagtgtgaaattttcagaattttaatagttaactttagtaccaatgcagttggcaagtggaacgaggtcactaaa |
233 |
Q |
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| T |
27442070 |
aagaaaacaaaatactggcgccatttagtgtgaaattttcagaattttaatagttaactttagtaccaatgcagttggcaagtggaacgaggtcactaaa |
27441971 |
T |
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| Q |
234 |
tggaaaag-nnnnnnnnnggaggcggtgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
323 |
Q |
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|||||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
27441970 |
tggaaaagaaaaaaaaaaggaggcgttgtcataaatatggtggtgtagt------tcttcattaaaaaagtacaattaatgtaagtataat |
27441886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 184 - 323
Target Start/End: Original strand, 3307768 - 3307907
Alignment:
| Q |
184 |
tagttaactttagtaccaatgcagttggcaagtggaacgaggtcactaaatggaaaagnnnnnnnnnggaggcggtgtcataaatatggtggtgtggttc |
283 |
Q |
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| T |
3307768 |
tagttaactttagtaccaatgcagttggcaagtggaacgaggtcactaaatggaaaagaaaaaaaaaggaggcgttgtcataaatatgatggtgtggttc |
3307867 |
T |
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| Q |
284 |
ttgatcttcattgaaaaagtacaattaatgtaagtataat |
323 |
Q |
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| T |
3307868 |
ttgatcttcattgaaaaagtacaattaatgtaagtataat |
3307907 |
T |
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Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 251 - 323
Target Start/End: Complemental strand, 16356856 - 16356784
Alignment:
| Q |
251 |
ggaggcggtgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
323 |
Q |
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| T |
16356856 |
ggaggcgttgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
16356784 |
T |
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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 50438763 - 50438834
Alignment:
| Q |
252 |
gaggcggtgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
323 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50438763 |
gaggcgttgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
50438834 |
T |
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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 25098834 - 25098905
Alignment:
| Q |
252 |
gaggcggtgtcataaatatggtggtgtggttcttgatcttcattgaaaaagtacaattaatgtaagtataat |
323 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25098834 |
gaggcgttgtcataaatatggtggtgtggttcttgatcttcaatgaaaaagtacaattaatgtaagtataat |
25098905 |
T |
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