View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_low_42 (Length: 329)

Name: NF3107_low_42
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_low_42
NF3107_low_42
[»] chr1 (1 HSPs)
chr1 (30-312)||(24041862-24042156)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 24042156 - 24041862
Alignment:
Q  30 gcaacagcactagatgctgctgcttttaccggcttttcatgttcgagcggttttatttctgcggctgctattttcacctgttcaggaggtgtgctctgaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24042156 gcaacagcactagatgctgctgcttttaccggcttttcatgttcgagcggttttatttctgcggctgctattttcacctgttcaggaggtgtgctctgaa 24042057  T
Q  130 c------------agaaactttcccacctgcactagactctggtttcgaggaatctgttacagcattttccgctgttgtcggagttttgtttatatcttc 217  Q
    |            ||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||    
T  24042056 ccgaaacatgttcagaaactttcccaccagcacaagactccggtttcgaggaacctgttacagcattttccggtgttgtcggagttttgtttttatcttc 24041957  T
Q  218 ggcattaggaggaggaagccttgcctctggcggacgtgttttccatacggccgcggaaacggattgtaggaaaccaccattgttaccgaggtttg 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24041956 ggcattaggaggaggaagccttgcctctggcggacgtgttttccatacggccgcggaaacggattgtaggaaaccaccattgttaccgaggtttg 24041862  T

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