View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_43 (Length: 324)
Name: NF3107_low_43
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 49301399 - 49301104
Alignment:
| Q |
11 |
catcatcacccatgtgctgttttatgtgtcaatatcagtcaaaatacttatgaaaagggtttaaagaatgtttgcgaaattgtgctagactagtattacc |
110 |
Q |
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| T |
49301399 |
catcatcacccatgtgctgttttatgtgtcaatatcagtcaaaatacttatgaaaagggtttaaagaatgtttgcgaaattgtgctagactagtattacc |
49301300 |
T |
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| Q |
111 |
tctgtccttttttgcaagtacatttttgcgagaacaaaaaagtgcttataaaaagggacataggtagtatatatgtatacaataccttgttgcacgagca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49301299 |
tctgtccttttttgcaagtacatttttgcgagaacaaaaaggtgcttataaaaagggacataggtattatatatgtatacaataccttgttgcacgagca |
49301200 |
T |
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| Q |
211 |
aaaatttggcccgtggcttgactccttatgagccagtctcgtcgcataccattctttcccgatgctccaacccatgtgtcaatttcaagtacctct |
306 |
Q |
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| T |
49301199 |
aaaatatggcccgtggcttgactccttatgagccagtctcgtcgcataccattctttcccgatgctccaacccatgtgtcaatttcaagtacctct |
49301104 |
T |
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