View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_low_44 (Length: 319)
Name: NF3107_low_44
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_44 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 48870555 - 48870224
Alignment:
| Q |
1 |
aaaaacaattttgacctagtaatcagtaatgctcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48870555 |
aaaaacaattttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtca |
48870456 |
T |
|
| Q |
101 |
taggtaagttatgcaattctccaatcttatgttactgatacatttataaaaaagtatagtgtttt-------------gatttcagtggtttctgcaaat |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
48870455 |
taggtaagttatgcaattctccaatcttatgttactgatacatttataaaaaattatagtgttttgattacagtttttgatttcagtgttttctgcaaat |
48870356 |
T |
|
| Q |
188 |
gatgatccaaggatggtgatgaaaggaattgatcatggtgcttgtgattatcttctgaaacctgttacattgaaagaggtacagatgatttggcaacatg |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48870355 |
gatgatccaaggatggtgatgaaaggaattgatcatggtgcttgtgattatcttctgaaacctgttacattgaaagaggtacagatgatttggcaacatg |
48870256 |
T |
|
| Q |
288 |
taattaggaagaagaaaactagcaaaagaagc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48870255 |
taattaggaagaagaaaactagcaaaagaagc |
48870224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 2904627 - 2904962
Alignment:
| Q |
1 |
aaaaacaattttgacctagtaatcagtaatgctcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2904627 |
aaaagcaattttgacctagtaatcagcaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtca |
2904726 |
T |
|
| Q |
101 |
taggtaagttatgcaattctccaatcttatgttactgatacatttataaaaaagtat--agtgttttg---------------atttcagtggtttctgc |
183 |
Q |
| |
|
| |||||||||| |||||| ||||||||||||| |||| ||| ||| |||| ||| || |||||| ||||||||| ||||||| |
|
|
| T |
2904727 |
tcagtaagttatgaaattcttcaatcttatgttattgatccatgcatagaaaattatttagggttttgattaaaaaatgtttgatttcagtgttttctgc |
2904826 |
T |
|
| Q |
184 |
aaatgatgatccaaggatggtgatgaaaggaattgatcatggtgcttgtgattatcttctgaaacctgttacattgaaagaggtacagatgatttggcaa |
283 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
2904827 |
aaatgatgatccaaagatggtgatgaaaggaattgatcatggtgcttgtgattatctgctgaaacctgttacattgaaggaggtacaaatgatttggcaa |
2904926 |
T |
|
| Q |
284 |
catgtaattaggaagaagaaaactagcaaaagaagc |
319 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||| |
|
|
| T |
2904927 |
catgtagtcaggaagaagaaaactaacaaaagaagc |
2904962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 2888524 - 2888865
Alignment:
| Q |
1 |
aaaaacaattttgacctagtaatcagtaatgctcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2888524 |
aaaagcaattttgacctagtaatcagcaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggatttacctgtca |
2888623 |
T |
|
| Q |
101 |
taggtaagttatgcaattctccaatctta------tgttactgatacatttataaaaaagta--tagtgtttt---------------gatttcagtggt |
177 |
Q |
| |
|
|| ||||||||||||||||| |||||||| ||||| |||| ||| |||||||| || ||| ||||| |||||||||| | |
|
|
| T |
2888624 |
taagtaagttatgcaattcttcaatcttattctattgttattgatccatgcataaaaaattatttagggttttgatcaaaaaatgtttgatttcagtgtt |
2888723 |
T |
|
| Q |
178 |
ttctgcaaatgatgatccaaggatggtgatgaaaggaattgatcatggtgcttgtgattatcttctgaaacctgttacattgaaagaggtacagatgatt |
277 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||| ||| |
|
|
| T |
2888724 |
ttctgcaaatgatgatccaaagatggtgatgaaaggaattgaacatggtgcttgtgattatctggtgaaacctgttagactgaaagaggtacagatcatt |
2888823 |
T |
|
| Q |
278 |
tggcaacatgtaattaggaagaagaaaactagcaaaagaagc |
319 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2888824 |
tggcagcatgtaatcaggaagaagaaaactagcaaaagaagc |
2888865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 2893119 - 2893453
Alignment:
| Q |
1 |
aaaaacaattttgacctagtaatcagtaatgctcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2893119 |
aaaagcaattttgacctagtaatcagcaatgttcatatgccagacatggacggatttaagcttcttgagcttgttggacttgagatggacctacctgtca |
2893218 |
T |
|
| Q |
101 |
taggtaagttatgcaattc-tccaatcttatgttactgatacatttataaaaaagtatagtgttttg---------------atttcagtggtttctgca |
184 |
Q |
| |
|
| |||||||||||||||| | | | ||||| | | ||||||| ||||| || |||||| ||||| ||||||||| ||||||| |
|
|
| T |
2893219 |
tcagtaagttatgcaattccttcgaccttatatcatcgatacatgtataaggaattatagtattttgattataaagtgtttgatttcagtgttttctgcg |
2893318 |
T |
|
| Q |
185 |
aatgatgatccaaggatggtgatgaaaggaattgatcatggtgcttgtgattatcttctgaaacctgttacattgaaagaggtacagatgatttggcaac |
284 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| | |||||||||||||||| |||||||| | |
|
|
| T |
2893319 |
aatgatgatccgaagatggtgatgaaaggaattgaacacggtgcttgtgattatctgctgaaacctgttagactgaaagaggtacagatcatttggcagc |
2893418 |
T |
|
| Q |
285 |
atgtaattaggaagaagaaaactagcaaaagaagc |
319 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2893419 |
atgtaatcaggaagaagaaaactagcaaaagaagc |
2893453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 303
Target Start/End: Complemental strand, 49061046 - 49060906
Alignment:
| Q |
163 |
tttgatttcagtggtttctgcaaatgatgatccaaggatggtgatgaaaggaattgatcatggtgcttgtgattatcttctgaaacctgttacattgaaa |
262 |
Q |
| |
|
||||||||||||| | |||||| ||| |||| ||| | ||||||||||||||||| |||||||| ||||||||||| ||||||||||| | ||| | |
|
|
| T |
49061046 |
tttgatttcagtgttgtctgcatatggtgatacaaagctggtgatgaaaggaatttcccatggtgcctgtgattatctgctgaaacctgtgagattagag |
49060947 |
T |
|
| Q |
263 |
gaggtacagatgatttggcaacatgtaattaggaagaagaa |
303 |
Q |
| |
|
||| || ||| |||||||| |||||||||||||||||||| |
|
|
| T |
49060946 |
gagctaaagaacatttggcagcatgtaattaggaagaagaa |
49060906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 49061269 - 49061165
Alignment:
| Q |
5 |
acaattttgacctagtaatcagtaatgctcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatagg |
104 |
Q |
| |
|
|||| |||||||| ||||||||| ||| || ||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| || |||||| | |
|
|
| T |
49061269 |
acaagtttgacctggtaatcagtgatgtacacatgccggacatggatggatttaagctgcttgaacttgtgggacttgaaatggaccttcccgtcataag |
49061170 |
T |
|
| Q |
105 |
taagt |
109 |
Q |
| |
|
||||| |
|
|
| T |
49061169 |
taagt |
49061165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 38953391 - 38953327
Alignment:
| Q |
37 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcat |
101 |
Q |
| |
|
||||| |||||||| || || || |||||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
38953391 |
atgcctgacatggacggtttcaaacttcttgagcatgttggacttgagatggatcttcctgtcat |
38953327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 47281111 - 47281038
Alignment:
| Q |
37 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagtt |
110 |
Q |
| |
|
||||| |||||||||||| | ||||| || || ||||| |||||||| ||||| || ||||||||| ||||||| |
|
|
| T |
47281111 |
atgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
47281038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 22085264 - 22085338
Alignment:
| Q |
36 |
tatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagtt |
110 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||| | || |||||||| |||||| |||||||||| ||||||| |
|
|
| T |
22085264 |
tatgcccgacatggatggatttaagttgcttgagttggtaggacttgaaatggacttacctgtcatcagtaagtt |
22085338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 34316049 - 34316113
Alignment:
| Q |
37 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcat |
101 |
Q |
| |
|
||||| ||||||||||| || || |||||||| | |||||||||||||||||| || |||||||| |
|
|
| T |
34316049 |
atgcctgacatggatggtttcaaacttcttgaacatgttggacttgagatggatcttcctgtcat |
34316113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 54895106 - 54895042
Alignment:
| Q |
37 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcat |
101 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
54895106 |
atgccagaaatggatggtttcaagctccttgagcaagttggacttgagatggacctgcctttcat |
54895042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 54905559 - 54905480
Alignment:
| Q |
10 |
tttgacctagtaatcagtaatgctcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatgga |
89 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||||||||||| || ||||| ||||||| ||||||||||| ||||| |
|
|
| T |
54905559 |
tttgacctagtaattagtgatgttagcatgccagacatggatggcttcaagctccttgagcaagttggacttgaaatgga |
54905480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 54889483 - 54889425
Alignment:
| Q |
37 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacc |
95 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||| ||||||||||| || |||||||| |
|
|
| T |
54889483 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacc |
54889425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University