View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_45 (Length: 318)
Name: NF3107_low_45
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 51689641 - 51689341
Alignment:
| Q |
19 |
tcctctgtaccgttgcatattttccgatcacctcactccggttcttgcttatcggtgtttggttaaagaagatgaaagagatgctcctagctttctcttt |
118 |
Q |
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| T |
51689641 |
tcctctgtaccgttgcatattttccgatcacctcactccggttcttgcttatcggtgtttggttaaagaagatgaaagagatgctcctagctttctcttt |
51689542 |
T |
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| Q |
119 |
gaatctgctgaacccggtcttcacatttctagcaccgtaagttacttcaattctatgaagcacaaacaccaga-----------cacattgacaccggac |
207 |
Q |
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| T |
51689541 |
gaatctgctgaacccggtcttcacatttctagcaccgtaagttacttcaattctatgaagcacaaacaccagacacaatactgacacattgacaccggac |
51689442 |
T |
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| Q |
208 |
atgaaataattgaatgtaatcacgtgtgttcgttcgtatggacacgcgtgagaagcttcaatcgtaagtgtcggtgctaacgtcattgtttatcctctct |
307 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51689441 |
atgaaataattgaatgtaatcacgtgtgttccttcgtatggacacgcgtgagaagcttcaatcataagtgtcggtgctaacgtcattgtttatcctctct |
51689342 |
T |
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| Q |
308 |
g |
308 |
Q |
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| T |
51689341 |
g |
51689341 |
T |
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