View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_low_47 (Length: 312)

Name: NF3107_low_47
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_low_47
NF3107_low_47
[»] chr5 (4 HSPs)
chr5 (1-312)||(9251850-9252155)
chr5 (281-312)||(1372084-1372115)
chr5 (279-312)||(15413954-15413987)
chr5 (279-312)||(40697154-40697187)
[»] chr4 (4 HSPs)
chr4 (276-312)||(43136694-43136730)
chr4 (279-312)||(948223-948256)
chr4 (279-312)||(28663404-28663437)
chr4 (284-312)||(3564354-3564382)
[»] chr3 (5 HSPs)
chr3 (276-312)||(34707804-34707840)
chr3 (282-312)||(29270326-29270356)
chr3 (282-312)||(35480310-35480340)
chr3 (280-312)||(21296729-21296761)
chr3 (279-311)||(29002863-29002895)
[»] chr8 (3 HSPs)
chr8 (282-312)||(34286640-34286670)
chr8 (283-312)||(11460851-11460880)
chr8 (284-312)||(11460796-11460824)
[»] chr7 (4 HSPs)
chr7 (282-312)||(23119848-23119878)
chr7 (282-312)||(29390459-29390489)
chr7 (283-312)||(38372524-38372553)
chr7 (284-312)||(30181517-30181545)
[»] chr1 (8 HSPs)
chr1 (282-312)||(994620-994650)
chr1 (282-312)||(26946012-26946042)
chr1 (282-312)||(45267444-45267474)
chr1 (279-312)||(1265784-1265817)
chr1 (283-312)||(26988296-26988325)
chr1 (279-308)||(37431286-37431315)
chr1 (284-312)||(7145210-7145238)
chr1 (282-310)||(37712217-37712245)
[»] chr6 (1 HSPs)
chr6 (284-312)||(25430854-25430882)
[»] chr2 (3 HSPs)
chr2 (284-312)||(9140654-9140682)
chr2 (284-312)||(17317160-17317188)
chr2 (284-312)||(38215990-38216018)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 9252155 - 9251850
Alignment:
Q  1 tctacaacctcatggccgagtgaccacttcttattatgtgtctcaaagtgtaagacctgcatgtgtttcacccgataaaagagtagagtaagtgttagaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9252155 tctacaacctcatggccgagtgaccacttctcattatgtgtctcaaagtgtaagacccgcatgtgtttcacccgataaaagagtagagtaagtgttagaa 9252056  T
Q  101 agtgtttctaacatttcttttaaattaaatataagtttcaaaatgtgtcttcgaccaaatttagataacataaaatttgannnnnnnnnnnnactaaata 200  Q
    ||     |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||            ||||||||    
T  9252055 ag-----ctaacatttcttttaaattaaatataagtttcaaaacgtgtcttggaccaaatttagataacataaaatttga-ttattttttttactaaata 9251962  T
Q  201 aacttatnnnnnnntagtgaacaaatttatttaataaataactcttacttggccctagggcgaatatatatgttataaggtctgtttggattgacttatt 300  Q
    ||||| |       || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  9251961 aacttgtaaaaaaatattgagcaaatttatttaataaataactcttacttggcactagggcgaatatatatgttatagggtctgtttgaattgacttatt 9251862  T
Q  301 tttgagcttatg 312  Q
    ||||||||||||    
T  9251861 tttgagcttatg 9251850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 312
Target Start/End: Complemental strand, 1372115 - 1372084
Alignment:
Q  281 tctgtttggattgacttatttttgagcttatg 312  Q
    ||||||||||||||||||||||||||||||||    
T  1372115 tctgtttggattgacttatttttgagcttatg 1372084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 15413954 - 15413987
Alignment:
Q  279 ggtctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||| |||||||||    
T  15413954 ggtctgtttggattgacttattttagagcttatg 15413987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 40697187 - 40697154
Alignment:
Q  279 ggtctgtttggattgacttatttttgagcttatg 312  Q
    ||||||||||||||| ||||||||||||||||||    
T  40697187 ggtctgtttggattggcttatttttgagcttatg 40697154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 43136730 - 43136694
Alignment:
Q  276 taaggtctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||||||||    
T  43136730 taaggtctgtttggattgacttatttttgagcttatg 43136694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 948256 - 948223
Alignment:
Q  279 ggtctgtttggattgacttatttttgagcttatg 312  Q
    ||||||||||||||||||||||||||||||||||    
T  948256 ggtctgtttggattgacttatttttgagcttatg 948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 28663404 - 28663437
Alignment:
Q  279 ggtctgtttggattgacttatttttgagcttatg 312  Q
    |||| |||||||||||||||||||||||||||||    
T  28663404 ggtccgtttggattgacttatttttgagcttatg 28663437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 3564382 - 3564354
Alignment:
Q  284 gtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||    
T  3564382 gtttggattgacttatttttgagcttatg 3564354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 34707840 - 34707804
Alignment:
Q  276 taaggtctgtttggattgacttatttttgagcttatg 312  Q
    ||||| |||||||||||||||||||||||||||||||    
T  34707840 taaggcctgtttggattgacttatttttgagcttatg 34707804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 29270326 - 29270356
Alignment:
Q  282 ctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||    
T  29270326 ctgtttggattgacttatttttgagcttatg 29270356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 35480310 - 35480340
Alignment:
Q  282 ctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||    
T  35480310 ctgtttggattgacttatttttgagcttatg 35480340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 280 - 312
Target Start/End: Original strand, 21296729 - 21296761
Alignment:
Q  280 gtctgtttggattgacttatttttgagcttatg 312  Q
    ||||||||||||||||||||||||||| |||||    
T  21296729 gtctgtttggattgacttatttttgagattatg 21296761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 29002895 - 29002863
Alignment:
Q  279 ggtctgtttggattgacttatttttgagcttat 311  Q
    |||||||||||||| ||||||||||||||||||    
T  29002895 ggtctgtttggattaacttatttttgagcttat 29002863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Complemental strand, 34286670 - 34286640
Alignment:
Q  282 ctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||    
T  34286670 ctgtttggattgacttatttttgagcttatg 34286640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 11460880 - 11460851
Alignment:
Q  283 tgtttggattgacttatttttgagcttatg 312  Q
    ||||||||||||||||||||||||||||||    
T  11460880 tgtttggattgacttatttttgagcttatg 11460851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 11460824 - 11460796
Alignment:
Q  284 gtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||    
T  11460824 gtttggattgacttatttttgagcttatg 11460796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 23119848 - 23119878
Alignment:
Q  282 ctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||    
T  23119848 ctgtttggattgacttatttttgagcttatg 23119878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 29390459 - 29390489
Alignment:
Q  282 ctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||    
T  29390459 ctgtttggattgacttatttttgagcttatg 29390489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Original strand, 38372524 - 38372553
Alignment:
Q  283 tgtttggattgacttatttttgagcttatg 312  Q
    ||||||||||||||||||||||||||||||    
T  38372524 tgtttggattgacttatttttgagcttatg 38372553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 30181517 - 30181545
Alignment:
Q  284 gtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||    
T  30181517 gtttggattgacttatttttgagcttatg 30181545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 994620 - 994650
Alignment:
Q  282 ctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||    
T  994620 ctgtttggattgacttatttttgagcttatg 994650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 26946012 - 26946042
Alignment:
Q  282 ctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||    
T  26946012 ctgtttggattgacttatttttgagcttatg 26946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 45267444 - 45267474
Alignment:
Q  282 ctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||||    
T  45267444 ctgtttggattgacttatttttgagcttatg 45267474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 1265817 - 1265784
Alignment:
Q  279 ggtctgtttggattgacttatttttgagcttatg 312  Q
    |||||||||| |||||||||||||||||||||||    
T  1265817 ggtctgtttgaattgacttatttttgagcttatg 1265784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 26988325 - 26988296
Alignment:
Q  283 tgtttggattgacttatttttgagcttatg 312  Q
    ||||||||||||||||||||||||||||||    
T  26988325 tgtttggattgacttatttttgagcttatg 26988296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 37431315 - 37431286
Alignment:
Q  279 ggtctgtttggattgacttatttttgagct 308  Q
    ||||||||||||||||||||||||||||||    
T  37431315 ggtctgtttggattgacttatttttgagct 37431286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 7145210 - 7145238
Alignment:
Q  284 gtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||    
T  7145210 gtttggattgacttatttttgagcttatg 7145238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 37712245 - 37712217
Alignment:
Q  282 ctgtttggattgacttatttttgagctta 310  Q
    |||||||||||||||||||||||||||||    
T  37712245 ctgtttggattgacttatttttgagctta 37712217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 25430882 - 25430854
Alignment:
Q  284 gtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||    
T  25430882 gtttggattgacttatttttgagcttatg 25430854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 9140654 - 9140682
Alignment:
Q  284 gtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||    
T  9140654 gtttggattgacttatttttgagcttatg 9140682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 17317160 - 17317188
Alignment:
Q  284 gtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||    
T  17317160 gtttggattgacttatttttgagcttatg 17317188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 38215990 - 38216018
Alignment:
Q  284 gtttggattgacttatttttgagcttatg 312  Q
    |||||||||||||||||||||||||||||    
T  38215990 gtttggattgacttatttttgagcttatg 38216018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University