View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_49 (Length: 303)
Name: NF3107_low_49
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 48 - 288
Target Start/End: Original strand, 26601438 - 26601680
Alignment:
| Q |
48 |
cgtgagcatatttttt-atgcaaaataaacaa-tttaaaggtataattaattgcttgctatataagatatttatacaaattactggactggtcttacata |
145 |
Q |
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| T |
26601438 |
cgtgagcatatttttttatgcaaaataaacaaatttaaaggtataattaattgcttgctatataagatatttatacaaattactagactggtcttacgta |
26601537 |
T |
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| Q |
146 |
gcaaattcaattgtaaagaacattcatgatcagtttcgtggagcttgtaacgaaattgaggttttggaataaattctaaacgaatgatctttgtttaatt |
245 |
Q |
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| T |
26601538 |
gcaaattcaactgtaaagaacattcatgatcagtttcgtggagcttgtaacgaaattgaggttttggaataaattctaaacgaatgaactttgtttaatt |
26601637 |
T |
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| Q |
246 |
aaactgtggaaatcattgagaatatatccgttacgtgcatcac |
288 |
Q |
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| T |
26601638 |
aaactgtggaaatcattgagaatatatccgttacgtgcatcac |
26601680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 26609542 - 26609681
Alignment:
| Q |
149 |
aattcaattgtaaagaacattcatgatca-gtttcgtggagcttgtaacgaaattgaggttttg-gaataaattctaaacgaatgatctttgtttaatta |
246 |
Q |
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| T |
26609542 |
aattcaattataaagcacattcatgatcaagtttggtggaatttgtgacgagatagaggttttgagaatcaattctaaattgttggatttgttttaatta |
26609641 |
T |
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| Q |
247 |
aactgtggaaatcattgagaatatatccg-ttacgtgcat |
285 |
Q |
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| T |
26609642 |
aactgtggaaattatcgagaatatatccgtttacgtgcat |
26609681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 26595768 - 26595818
Alignment:
| Q |
244 |
ttaaactgtggaaatcattgagaatatatccg-ttacgtgcatcacaggtt |
293 |
Q |
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| T |
26595768 |
ttaaactgtggaaattattgagaatatatccgattaggtgcatcactggtt |
26595818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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