View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_low_54 (Length: 283)
Name: NF3107_low_54
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_54 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 22431651 - 22431915
Alignment:
| Q |
1 |
tcatccaaatacaatggagcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaagattggatat |
100 |
Q |
| |
|
||||||| ||| ||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
22431651 |
tcatccatataaaatggagcgtcccgaagattcttcaataatgaggcgtttctgtttgttgcagaactagttgatgctttatccgaagaagattggatat |
22431750 |
T |
|
| Q |
101 |
ggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagt |
200 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22431751 |
ggaagccatgatctttttcact---tgtatcttttatttcactaattcgggatttgatgttctgaatcttgtaagctatttggagacgaagaatcttagt |
22431847 |
T |
|
| Q |
201 |
tttgatcaagtcaactccagcagcacatcctggatctgaagattgttggtcctcaaggaagatataat |
268 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
22431848 |
tttgatcaagtcaagaccagcagcgcatccaggatcagaagattgttgttcttcaaggaagatataat |
22431915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 22632365 - 22632632
Alignment:
| Q |
1 |
tcatccaaatacaatggagcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaagattggatat |
100 |
Q |
| |
|
||||||| ||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
22632365 |
tcatccatataaaatggagcgtctcgaaggttctgcaataatgaggcatttctgtttgttgcagaactacttgatggtttatccgaagaagattggatgt |
22632464 |
T |
|
| Q |
101 |
ggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagt |
200 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||||| || |||| ||||||||||| ||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
22632465 |
ggaagccatgatctttttc---acttgtttcttttatttctctaattctggatttgatgttctgaatcttgtcagcaatttggagacgaagaatcttagt |
22632561 |
T |
|
| Q |
201 |
tttgatcaagtcaa---ctccagcagcacatcctggatctgaagattgttggtcctcaaggaagatataat |
268 |
Q |
| |
|
||| | |||||||| |||||| ||||||||| ||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
22632562 |
tttcaccaagtcaatagctccagtagcacatccaggatcagaagattgttgttcctcaagaaagatataat |
22632632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 22358516 - 22358772
Alignment:
| Q |
15 |
tggagcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatct |
114 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22358516 |
tggagcgtctcgaaggttctgaaataatgaggcgtttctgtttgttgcataactagttgatgctttatccgaagaagattggatatagaagccatgatct |
22358615 |
T |
|
| Q |
115 |
ttttcagtatttgtatcttttatttcactcattcgggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagt--- |
211 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||| ||| |
|
|
| T |
22358616 |
ttttcagttcttgtatcatttatttcacttattcgggatttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttgacacagtttg |
22358715 |
T |
|
| Q |
212 |
caactccagcagcacatcctggatctgaagattgttggtcctcaaggaagatataat |
268 |
Q |
| |
|
||| |||||||||||||| ||||| | || ||||| |||||||| |||||||||| |
|
|
| T |
22358716 |
taacaccagcagcacatccaggatcaggagcatgttgttcctcaagaaagatataat |
22358772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 22468448 - 22468715
Alignment:
| Q |
1 |
tcatccaaatacaatggagcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaagattggatat |
100 |
Q |
| |
|
||||||| ||| |||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||| | |
|
|
| T |
22468448 |
tcatccatataaaatggagcgtctcgaaggttctgcaaaaatgaggcgtttctgtttgttgcagaactgcttgatggtttatctgaagaagattggatgt |
22468547 |
T |
|
| Q |
101 |
ggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagt |
200 |
Q |
| |
|
|||||||||||||||| | | |||| ||||||||||| || |||||||| ||||||| |||||||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
22468548 |
tgaagccatgatctttt---gcacttgtttcttttatttctctgattcgggacttgatgttctgaatcttgtaagttatttggagacgaaggatcttagt |
22468644 |
T |
|
| Q |
201 |
tttgatcaagtcaa---ctccagcagcacatcctggatctgaagattgttggtcctcaaggaagatataat |
268 |
Q |
| |
|
||| | |||||||| | |||||||||||||| ||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
22468645 |
tttcaccaagtcaacagcaccagcagcacatccaggatcagaagattgttgttcctcaagtaagatataat |
22468715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 22636017 - 22636207
Alignment:
| Q |
15 |
tggagcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatct |
114 |
Q |
| |
|
|||||||||| ||| |||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
22636017 |
tggagcgtctcgaaggttctgaaatagtgaggcgtttctgtttgttgcagaactagttgatgctttatccgatgaagattggatatagaagccatgatct |
22636116 |
T |
|
| Q |
115 |
ttttcagtatttgtatcttttatttcactcattcgggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga |
205 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
22636117 |
ttttcagttcttgtatcatttatttcacttattcgggatttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttga |
22636207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 268
Target Start/End: Original strand, 22368426 - 22368676
Alignment:
| Q |
15 |
tggagcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatct |
114 |
Q |
| |
|
|||||| ||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||| |
|
|
| T |
22368426 |
tggagcatctcgaaggttctgaaataatgaggcatttctgtttgttgcagaactacttgatgctttatccaaagaagattggatgtcgaagtcatgatcc |
22368525 |
T |
|
| Q |
115 |
ttttcagtatttgtatcttttatttcactcattcgggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaa |
214 |
Q |
| |
|
||||| | |||| ||||||||||| || ||| |||| ||||||| ||||||||| ||||| ||||||||||| || | ||||||||| |||||||| |
|
|
| T |
22368526 |
ttttc---acttgtttcttttatttccctaatttgggaattgatgttctgaatcttataagcaatttggagacgtagttttgtagttttgagcaagtcaa |
22368622 |
T |
|
| Q |
215 |
ctccagcagcacatcctggatctgaagattgttggtcctcaaggaagatataat |
268 |
Q |
| |
|
| ||||||||||||| || || |||||||| || ||||||||||||||||||| |
|
|
| T |
22368623 |
cagcagcagcacatccaggttcagaagattgatgttcctcaaggaagatataat |
22368676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 61 - 268
Target Start/End: Original strand, 22631029 - 22631236
Alignment:
| Q |
61 |
gcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggatttgatgt |
160 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
22631029 |
gcagaactacttgatggtttatccgaagaagattggatgtggaagccatgatctttttcact---tgtttcttttatttctctaatttgggatttgatgt |
22631125 |
T |
|
| Q |
161 |
cctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaa---ctccagcagcacatcctggatctgaagattgttggtcctcaag |
257 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||| | |||||||| |||||||||||||||| ||||| | || ||||| |||||| | |
|
|
| T |
22631126 |
tctgaatcttgtaagcaatttggagacgaagaatcttagttttcaccaagtcaacggctccagcagcacatccaggatcaggagcatgttgttcctcatg |
22631225 |
T |
|
| Q |
258 |
gaagatataat |
268 |
Q |
| |
|
||||||||||| |
|
|
| T |
22631226 |
gaagatataat |
22631236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 22437146 - 22437335
Alignment:
| Q |
13 |
aatggagcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgat |
112 |
Q |
| |
|
|||||||| | | ||| |||||| |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| | ||||| | |||| |
|
|
| T |
22437146 |
aatggagcctgtcgaaggttctgaaataatgaattgtttatgtttggtgcagaactacttgatgctttatccgaagaagattggagacggaaggcttgat |
22437245 |
T |
|
| Q |
113 |
ctttttcagtatttgtatcttttatttcactcattcgggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga |
205 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| || ||||||||||| |
|
|
| T |
22437246 |
ctttttc---acttgtatcttttatttcactcattcgggatttgatgttctgaatcgtgtaggctatttggagacggtgagccatagttttga |
22437335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 22443256 - 22443506
Alignment:
| Q |
18 |
agcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttt |
117 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||| |||||| |||||||||||||| ||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
22443256 |
agcgtcttgaaggttgtgcaataatgaggcgttttcacttgttggagaactacttgatggcttatcggaagaagatcggatttggaagccatgatctttt |
22443355 |
T |
|
| Q |
118 |
tcagtatttgtatctt---ttatttcactcattcgggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaa |
214 |
Q |
| |
|
||| | || ||||| ||||||| || ||||| || ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22443356 |
tcact---tgaatcttgttttatttctctaattcgagaattgatgttctgaatcttaactgctatttggagacgaagaatcttagttttgatcaagtcaa |
22443452 |
T |
|
| Q |
215 |
ctccagcagcacatcctggatctgaagattgttggtcctcaaggaagatataat |
268 |
Q |
| |
|
|||||||||||||| |||| |||||||| || || |||||||||||||||| |
|
|
| T |
22443453 |
gaccagcagcacatccaagatcagaagattgatgttcttcaaggaagatataat |
22443506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 22630939 - 22631029
Alignment:
| Q |
1 |
tcatccaaatacaatggagcgtcttgaaagttctgcaataatgaggtgtttctgtttgttgcagaactacttgatgctttatccgaagaag |
91 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22630939 |
tcatccaaatacaatggagcatctcgaaggttctggaataatgaggtgtttctgtttgttgcagaactacttgatggtttatccgaagaag |
22631029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 22459033 - 22459181
Alignment:
| Q |
54 |
gtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggat |
153 |
Q |
| |
|
||||||||||| ||| ||||| ||| ||| |||| ||||||||||| |||| ||| |||||| || | |||||| || |||||||| ||| ||||| |
|
|
| T |
22459033 |
gtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccact---tgtatcattcatttcactaatttgggat |
22459129 |
T |
|
| Q |
154 |
ttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga |
205 |
Q |
| |
|
||||| | |||||||||||| ||||||||| |||||||||| |||||||||| |
|
|
| T |
22459130 |
ttgattttctgaatcttgtatgctatttggcgacgaagaattatagttttga |
22459181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 22482014 - 22482162
Alignment:
| Q |
54 |
gtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggat |
153 |
Q |
| |
|
||||||||||| ||| ||||| ||| ||| |||| ||||||||||| |||| ||| |||||| || | |||||| || |||||||| ||| ||||| |
|
|
| T |
22482014 |
gtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccact---tgtatcattcatttcactaatttgggat |
22482110 |
T |
|
| Q |
154 |
ttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga |
205 |
Q |
| |
|
||||| | |||||||||||| ||||||||| |||||||||| |||||||||| |
|
|
| T |
22482111 |
ttgattttctgaatcttgtatgctatttggcgacgaagaattatagttttga |
22482162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 22207833 - 22207785
Alignment:
| Q |
157 |
atgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
22207833 |
atgtcctgaatcttgtaagctatttgtagacgaagaatcctggttttga |
22207785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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