View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_55 (Length: 282)
Name: NF3107_low_55
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 2288531 - 2288269
Alignment:
| Q |
3 |
gtattatcctctcccactccagtaacaaggactaactatcgacccatattacatttaattggttttagctttgtatttgtgcaatattctttccaatttt |
102 |
Q |
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| T |
2288531 |
gtattatcctctcccactccagtaacaaggactaactatcgacccatattacatttaattggttttagctttgtatttgtgcaatattctttccaatttt |
2288432 |
T |
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| Q |
103 |
tattcacgaatttcgttttgaaaatacaagaattatgtacatgtatgacttggttgggttgagcaaaatatttcattttgtgttggataaagatttggtg |
202 |
Q |
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| T |
2288431 |
tattcaggaatttcgttttgaaaatacaagaattatgtacatgtatgacttggttgggttgagcaaaatatttcattttgtgttggatcaagatttggtt |
2288332 |
T |
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| Q |
203 |
cggttggtaaagtgatgcaatcatgtttcggtgactgtttgatcaagatcagacgatcctaat |
265 |
Q |
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| T |
2288331 |
cggttggtaaagtgatgcaatcatgtttcggtgactgtttgatcaagatcggacgatcctaat |
2288269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 24999624 - 24999677
Alignment:
| Q |
209 |
gtaaagtgatgcaatcatgtttcggtgactgtttgatcaagatcagacgatcct |
262 |
Q |
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| T |
24999624 |
gtaaagtgacacagtcctgtttcggtgtctgttcgatcaagatcagacgatcct |
24999677 |
T |
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