View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_56 (Length: 280)
Name: NF3107_low_56
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 40519817 - 40519559
Alignment:
| Q |
14 |
gattttggttaaagacatttcaccaaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgtta |
113 |
Q |
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| T |
40519817 |
gattttggttaaagacatttcaccaaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgtta |
40519718 |
T |
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| Q |
114 |
aaactaacaatgcagaggataatataac-aaaacaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgt |
212 |
Q |
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| T |
40519717 |
aaactaacaatgcagaggataatataacaaaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgt |
40519618 |
T |
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| Q |
213 |
gacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatg |
271 |
Q |
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| T |
40519617 |
gacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatg |
40519559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 38 - 270
Target Start/End: Original strand, 41781857 - 41782084
Alignment:
| Q |
38 |
aaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgca-gaggataat |
136 |
Q |
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| T |
41781857 |
aaaaaattcatatcatttattgatattagttttgaactctaaattttttgacttttttctagcctcttaattgttaaaactaacaatgcaagaggctaat |
41781956 |
T |
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| Q |
137 |
ataacaaaacaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgaga |
236 |
Q |
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| T |
41781957 |
atga--aaataaaaattcgaatacaaagtcatcgcaatgttaa----tatgttaatttacataaaagtgtgaatgtgacatgttgaagttcttcatgaga |
41782050 |
T |
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| Q |
237 |
ccatggagaataattgtcacattaaattgttgat |
270 |
Q |
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| T |
41782051 |
ccatgggaaataattgtcacattaaactgttgat |
41782084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 40510680 - 40510589
Alignment:
| Q |
180 |
ttaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatg |
271 |
Q |
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| T |
40510680 |
ttaatgtgttaaattacataaaagtgtgaatgtgacgtaccaaaattgtcgatgagaccatgggaaataattgtcacattaaattgttgatg |
40510589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 65 - 271
Target Start/End: Complemental strand, 18163795 - 18163595
Alignment:
| Q |
65 |
agttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgcagaggataatat-aacaaaacaaaaatcccaatacaaa |
163 |
Q |
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| T |
18163795 |
agttttgagctataaaatttttaacttttttctagcctcttagttgttaaaactaacaatgcagaggctaatatgaacaaaa---aagtcctaaaacaaa |
18163699 |
T |
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| Q |
164 |
gtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaat |
263 |
Q |
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| T |
18163698 |
gtcatcaaaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatgaggaatcattgtcacattaaat |
18163603 |
T |
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| Q |
264 |
tgttgatg |
271 |
Q |
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| T |
18163602 |
tgttgatg |
18163595 |
T |
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