View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_6 (Length: 625)
Name: NF3107_low_6
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 20 - 615
Target Start/End: Original strand, 45565501 - 45566096
Alignment:
| Q |
20 |
cgcctctgctaactgaatcccacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatggggacatc |
119 |
Q |
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| T |
45565501 |
cgcctctgctaactgaatcccacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatggggacatc |
45565600 |
T |
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| Q |
120 |
catttgaacatagaactcctctctcttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgttagagaattcg |
219 |
Q |
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| T |
45565601 |
catttgaacatggaactcctctcttttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgttacagaattcg |
45565700 |
T |
|
| Q |
220 |
caaaccccacattctcatccattcgcccaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccaca |
319 |
Q |
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| T |
45565701 |
caaaccccacattctcatccattcaccgaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccaca |
45565800 |
T |
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| Q |
320 |
accaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtgtcaccatcct |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45565801 |
accaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtatcaccatcct |
45565900 |
T |
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| Q |
420 |
taagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaataatcctcccattcaaatatgtacctccttagagcgcccaatttggga |
519 |
Q |
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| T |
45565901 |
taagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaataatcctctcattcaaatatgtacctccttagagcgcgcaatttggga |
45566000 |
T |
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| Q |
520 |
agcttgcacgctgcccctaaatctatctaactcatcccgacattcatcaatggaaacttgatacttactttggagctttcttcccggttcgttcat |
615 |
Q |
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| T |
45566001 |
agcttgcacgctgcccctaaatctctctaactcatcccgacattcatcaatggaaactcgatacttactttggagctttcttccccgttcgttcat |
45566096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 8179388 - 8179449
Alignment:
| Q |
410 |
tcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaa |
471 |
Q |
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||||||||||| |||||||||||||| ||| |||| |||||||| |||||| |||||||||| |
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| T |
8179388 |
tcaccatccttcagccaaatcaccttagctctttgcttccaaaacgcttcttcttgtgccaa |
8179449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 45286972 - 45286940
Alignment:
| Q |
82 |
ccaatcgttctcatagtttgtttcacaatgggg |
114 |
Q |
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| T |
45286972 |
ccaatcgttctcgtagtttgtttcacaatgggg |
45286940 |
T |
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