View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_62 (Length: 257)
Name: NF3107_low_62
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 22863384 - 22863157
Alignment:
| Q |
22 |
acggagtccgtcagcggagacggtggagcatcaagtataaaccctacctccggtgaccggaaatacgagtgtcaatattgttgtcgagaatttgcaaact |
121 |
Q |
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| T |
22863384 |
acggaatccgtcagcggagacggtggagcatcaagtataaaccctacctccggtgaccggaaatacgagtgtcaatattgttgtcgagaatttgcaaact |
22863285 |
T |
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| Q |
122 |
cacaagccctaggtggacaccaaaacgcacacaaaaaagagcgccaacaactcaaacgagcacagttacaagcttcaagaaacgctgccgtttcgtttgt |
221 |
Q |
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| T |
22863284 |
cgcaagccctaggtggacaccaaaacgcacacaaaaaagagcgccaacaactcaaacgagcacagttacaagcttcaagaaacgctgccgtttcgtttgt |
22863185 |
T |
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| Q |
222 |
tcgaaacccgattatctccgcctttgct |
249 |
Q |
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| T |
22863184 |
tcgaaacccgattatctccgcctttgct |
22863157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 68 - 256
Target Start/End: Original strand, 49774299 - 49774487
Alignment:
| Q |
68 |
cctccggtgaccggaaatacgagtgtcaatattgttgtcgagaatttgcaaactcacaagccctaggtggacaccaaaacgcacacaaaaaagagcgcca |
167 |
Q |
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| T |
49774299 |
cctccggtgaaagaaaatacgagtgccaatattgttgcagagagtttgcaaattcacaagcccttggcggacaccaaaacgctcacaaaaaagaacgtca |
49774398 |
T |
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| Q |
168 |
acaactcaaacgagcacagttacaagcttcaagaaacgctgccgtttcgtttgttcgaaacccgattatctccgcctttgctactccac |
256 |
Q |
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| T |
49774399 |
acaactcaaacgtgctcagttacaagctaaccgaaacgccgccgtgtctttcgttcgaaaccctatcatctccgcctttgctcctccac |
49774487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 31520047 - 31519969
Alignment:
| Q |
84 |
atacgagtgtcaatattgttgtcgagaatttgcaaactcacaagccctaggtggacaccaaaacgcacacaaaaaagag |
162 |
Q |
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| T |
31520047 |
atacgagtgtcaatattgttgtagagaatttgcaaattcacaagccttaggaggacaccaaaatgcacacaagaaagag |
31519969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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