View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_low_63 (Length: 254)

Name: NF3107_low_63
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_low_63
NF3107_low_63
[»] chr3 (24 HSPs)
chr3 (15-254)||(3746003-3746242)
chr3 (183-251)||(4142119-4142187)
chr3 (186-250)||(3754599-3754663)
chr3 (198-245)||(2631361-2631408)
chr3 (187-245)||(2644351-2644409)
chr3 (187-245)||(2659141-2659199)
chr3 (181-251)||(4157927-4157997)
chr3 (185-240)||(2686299-2686354)
chr3 (198-245)||(37753345-37753392)
chr3 (184-254)||(2678385-2678455)
chr3 (197-251)||(2696731-2696785)
chr3 (176-245)||(2459279-2459348)
chr3 (200-245)||(13498228-13498273)
chr3 (198-245)||(754609-754656)
chr3 (198-245)||(2492086-2492133)
chr3 (183-245)||(9587170-9587232)
chr3 (197-254)||(803217-803274)
chr3 (198-251)||(1891064-1891117)
chr3 (190-251)||(1940571-1940632)
chr3 (200-245)||(9561987-9562032)
chr3 (197-245)||(956385-956433)
chr3 (190-254)||(1007456-1007520)
chr3 (190-254)||(1022484-1022548)
chr3 (197-245)||(2442043-2442091)
[»] chr5 (13 HSPs)
chr5 (183-254)||(11081808-11081879)
chr5 (190-251)||(23766854-23766915)
chr5 (190-251)||(23816702-23816763)
chr5 (200-245)||(20301447-20301492)
chr5 (186-251)||(23769634-23769699)
chr5 (186-251)||(23819482-23819547)
chr5 (186-251)||(23861014-23861079)
chr5 (199-253)||(3181713-3181767)
chr5 (200-245)||(20292999-20293044)
chr5 (186-251)||(23732165-23732230)
chr5 (186-251)||(23764248-23764313)
chr5 (186-251)||(23814081-23814146)
chr5 (108-152)||(1427603-1427647)
[»] chr1 (2 HSPs)
chr1 (183-250)||(51381440-51381507)
chr1 (197-237)||(25609376-25609416)
[»] scaffold0044 (1 HSPs)
scaffold0044 (198-250)||(89142-89194)
[»] chr4 (2 HSPs)
chr4 (197-245)||(20016184-20016232)
chr4 (197-251)||(20019771-20019825)
[»] chr2 (2 HSPs)
chr2 (197-245)||(36577370-36577418)
chr2 (198-250)||(33038159-33038211)
[»] chr8 (1 HSPs)
chr8 (183-254)||(19727876-19727947)
[»] chr6 (2 HSPs)
chr6 (197-237)||(19119075-19119115)
chr6 (197-237)||(19126369-19126409)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 3746242 - 3746003
Alignment:
Q  15 cacagacttctggaacttttctaaaatcagtagacttcaaagtacctctcttgatatcataaagaatcaaacatttgtcaacaccccctataaacttcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746242 cacagacttctggaacttttctaaaatcagtagacttcaaagtacctctcttgatatcataaagaatcaaacatttgtcaacaccccctataaacttcag 3746143  T
Q  115 tagcacttgaccatcctcaaagatatatactgctttggcgcgtacatgagaattagttggttctggcttgtaaggaatagtcaacaatttagtccaagac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746142 tagcacttgaccatcctcaaagatatatactgctttggcgcgtacatgagaattagttggttctggcttgtaaggaatagtcaacaatttagtccaagac 3746043  T
Q  215 tcttgctttgcatattccttcataatccaaatatcatcac 254  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3746042 tcttgctttgcatattccttcataatccaaatatcatcac 3746003  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 4142119 - 4142187
Alignment:
Q  183 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||||    
T  4142119 tgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 3754663 - 3754599
Alignment:
Q  186 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 250  Q
    |||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| ||||    
T  3754663 aaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatca 3754599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 2631408 - 2631361
Alignment:
Q  198 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaa 2631361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 2644351 - 2644409
Alignment:
Q  187 aggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 2644409  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 2659141 - 2659199
Alignment:
Q  187 aggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||  |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaa 2659199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 4157927 - 4157997
Alignment:
Q  181 cttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    ||||||||  ||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||||    
T  4157927 cttgtaagagatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4157997  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 2686299 - 2686354
Alignment:
Q  185 taaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataat 240  Q
    ||||||||||| ||||||||| ||||||||||||  ||| ||||||||||||||||    
T  2686299 taaggaatagtgaacaatttattccaagactctttttttccatattccttcataat 2686354  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 37753345 - 37753392
Alignment:
Q  198 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaa 37753392  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 2678385 - 2678455
Alignment:
Q  184 gtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcac 254  Q
    |||||||||||| |||||||||||||| |||||||  ||| ||||||  ||||||| ||||| ||||||||    
T  2678385 gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcac 2678455  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 2696731 - 2696785
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||||| |||||    
T  2696731 aacaatttaatccaagactctttatttccatattccttcataatccaaacatcat 2696785  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 2459348 - 2459279
Alignment:
Q  176 tctggcttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||| |||||| ||  || |||||||| |||||||||||||  ||| |||||||||||||||||||||    
T  2459348 tctggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaa 2459279  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 13498273 - 13498228
Alignment:
Q  200 aatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaa 13498228  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 754609 - 754656
Alignment:
Q  198 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||||||||||||||| | | |||| ||||||||||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaa 754656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 2492133 - 2492086
Alignment:
Q  198 acaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||||||||||||| | ||| |||| ||||||||||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaa 2492086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 9587170 - 9587232
Alignment:
Q  183 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    ||||||||||| |  ||||||| ||||||| |||||  ||| |||||||||||||||||||||    
T  9587170 tgtaaggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaa 9587232  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 803217 - 803274
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcac 254  Q
    ||||| ||||||||||||||||  ||| ||||||| ||||||| ||||| ||||||||    
T  803217 aacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcac 803274  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 1891064 - 1891117
Alignment:
Q  198 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||||||||||||| ||||  ||| ||| ||||||||||||||||| |||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcat 1891117  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 1940571 - 1940632
Alignment:
Q  190 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||| |||||||||||||| || ||||| ||| ||| ||||||||||| ||||| |||||    
T  1940571 aatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcat 1940632  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 9561987 - 9562032
Alignment:
Q  200 aatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||||||||||||| ||| |||| || |||||||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaa 9562032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 956433 - 956385
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||  |||||||||||  ||| |||||||||||||||||||||    
T  956433 aacaatttatgccaagactctttttttccatattccttcataatccaaa 956385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 1007520 - 1007456
Alignment:
Q  190 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcac 254  Q
    |||||| |||||||||||||| ||||| |  ||| ||||||||||||| | ||||| ||||||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcac 1007456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 1022548 - 1022484
Alignment:
Q  190 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcac 254  Q
    |||||| |||||||||||||| ||||| |  ||| ||||||||||||| | ||||| ||||||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcac 1022484  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 2442091 - 2442043
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    ||||||||||||||||| ||||  ||| |||| ||||||||||||||||    
T  2442091 aacaatttagtccaagaatctttatttccatactccttcataatccaaa 2442043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 11081879 - 11081808
Alignment:
Q  183 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcac 254  Q
    ||||||||||||| ||||||||||||||||||||||  ||| |||| |||||||||| ||||| ||||||||    
T  11081879 tgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcatcac 11081808  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 23766854 - 23766915
Alignment:
Q  190 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||| ||||||||||||||||||||||  ||| ||||||| ||||||||||||| |||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23766915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 23816702 - 23816763
Alignment:
Q  190 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||| ||||||||||||||||||||||  ||| ||||||| ||||||||||||| |||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23816763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 20301492 - 20301447
Alignment:
Q  200 aatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||||||||||||   ||||||||||||||||||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaa 20301447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 23769634 - 23769699
Alignment:
Q  186 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||| ||||| |||||||||||||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23769634 aaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 23819482 - 23819547
Alignment:
Q  186 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||| ||||| |||||||||||||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23819482 aaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 23861014 - 23861079
Alignment:
Q  186 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||||||| |||||||||||||||||| ||| | |  ||||||||||||| ||||||| |||||    
T  23861014 aaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 23861079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 3181767 - 3181713
Alignment:
Q  199 caatttagtccaagactcttgctttgcatattccttcataatccaaatatcatca 253  Q
    ||||||| ||||||||||||  ||| ||||||||||||||| ||||| |||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcatca 3181713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 20293044 - 20292999
Alignment:
Q  200 aatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||||||||||||   || |||||||||||||||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaa 20292999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 23732230 - 23732165
Alignment:
Q  186 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||||||| |||| |||| |||||||| |||  ||  ||||||||||||||||||||| |||||    
T  23732230 aaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcat 23732165  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 23764248 - 23764313
Alignment:
Q  186 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||||||| |||||| ||||||||||| ||| | |  ||||||||||||| ||||||| |||||    
T  23764248 aaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcat 23764313  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 23814081 - 23814146
Alignment:
Q  186 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||||||| |||||||||||||||||| ||  | |  ||||||||||||| ||||||| |||||    
T  23814081 aaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcat 23814146  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 1427603 - 1427647
Alignment:
Q  108 acttcagtagcacttgaccatcctcaaagatatatactgctttgg 152  Q
    ||||||| ||||||||| |||||||||||||||||| ||| ||||    
T  1427603 acttcagcagcacttgatcatcctcaaagatatatattgccttgg 1427647  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 51381440 - 51381507
Alignment:
Q  183 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 250  Q
    ||||||||||| | ||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||    
T  51381440 tgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 25609376 - 25609416
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcat 237  Q
    |||||||||||||||||||||||  || |||||||||||||    
T  25609376 aacaatttagtccaagactcttgaatttcatattccttcat 25609416  T

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Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 89194 - 89142
Alignment:
Q  198 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 250  Q
    |||||||||||||||||||||  ||| ||||||||||||||| ||||||||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 20016184 - 20016232
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    |||||||||||||||||||||||  || ||||||||||||| |||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaa 20016232  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 20019771 - 20019825
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 251  Q
    |||||||||||||||||||||||  || ||||||||||||| | ||||| |||||    
T  20019771 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 20019825  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcataatccaaa 245  Q
    ||||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 33038211 - 33038159
Alignment:
Q  198 acaatttagtccaagactcttgctttgcatattccttcataatccaaatatca 250  Q
    ||||| |||||||||||| ||  ||| ||||||||||||||||||||| ||||    
T  33038211 acaatctagtccaagactttttgtttccatattccttcataatccaaacatca 33038159  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 19727947 - 19727876
Alignment:
Q  183 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcac 254  Q
    |||||| |||||| |||| ||||||||| |||||||  |||||||||||  |||||| ||||| ||||||||    
T  19727947 tgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcac 19727876  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 19119115 - 19119075
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcat 237  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcat 19119075  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 19126409 - 19126369
Alignment:
Q  197 aacaatttagtccaagactcttgctttgcatattccttcat 237  Q
    ||||||||||||||||||||||  ||| |||||||||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcat 19126369  T

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