View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_64 (Length: 254)
Name: NF3107_low_64
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 6355922 - 6356151
Alignment:
| Q |
8 |
ccaagaatatcaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttc |
107 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6355922 |
ccaacaataccaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttc |
6356021 |
T |
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| Q |
108 |
ccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggtaaatgaaagaaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6356022 |
ccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatatggtaaatgaaagaaag |
6356121 |
T |
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| Q |
208 |
gcttgtgtcttgtaaccataggggtggtta |
237 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
6356122 |
gcttgtgtcttgtaaccataggggtggtta |
6356151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 233
Target Start/End: Original strand, 7463037 - 7463248
Alignment:
| Q |
22 |
ggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttcccttcaacttttgg |
121 |
Q |
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| T |
7463037 |
ggcaccaccaatgatacctgtagggttattagttgcagttagggcatcaatgtccaacgcattcttttgcatcaacaccacagttcccttcaacttttgg |
7463136 |
T |
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| Q |
122 |
cctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgta |
221 |
Q |
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| T |
7463137 |
cctctatcaaagagaccagttacccctgaaaacatctttgaatatgctttaaatatattacactatatttggtaaatgaaagaaatgcctgtgtcttgta |
7463236 |
T |
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| Q |
222 |
accataggggtg |
233 |
Q |
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||||| |||||| |
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| T |
7463237 |
accatgggggtg |
7463248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 6365430 - 6365569
Alignment:
| Q |
82 |
attcttttgcatcaacaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtatta |
181 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| | || ||| ||||||| | ||||| |||||||||| |
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| T |
6365430 |
attcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa---tgctt-aaatgtatta |
6365525 |
T |
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| Q |
182 |
cactatatttggtaaatgaaagaaaggcttgtgtcttgtaacca |
225 |
Q |
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| T |
6365526 |
cactatctttggtaaatgaaagaaaagcttgtgttttgttacca |
6365569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 6373177 - 6373238
Alignment:
| Q |
170 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccatagggg |
231 |
Q |
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|||||||||||||||||| |||| |||||||||||| | ||||||||||||||||| |||| |
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| T |
6373177 |
ttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattgggg |
6373238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 6393093 - 6393149
Alignment:
| Q |
170 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccat |
226 |
Q |
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|||||||||||||||||| ||||| ||||||||||| | ||||||||||||||||| |
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| T |
6393093 |
ttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccat |
6393149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 6412233 - 6412287
Alignment:
| Q |
170 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaacc |
224 |
Q |
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|||||||||||||||||| ||||| ||||||||||| | ||||||||||||||| |
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| T |
6412233 |
ttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaacc |
6412287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 6426643 - 6426680
Alignment:
| Q |
82 |
attcttttgcatcaacaccacagttcccttcaactttt |
119 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |
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| T |
6426643 |
attcttttgcatcaacaccacagttccctttaactttt |
6426680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 6373611 - 6373671
Alignment:
| Q |
170 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggg |
230 |
Q |
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||||| |||||||| ||| ||||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
6373611 |
ttaaacgtattacaatatctttggctaatgaaagaaaagcttgtgtcttttaaccataggg |
6373671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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