View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_68 (Length: 251)
Name: NF3107_low_68
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 42579382 - 42579471
Alignment:
| Q |
1 |
ctaatccttacgataattctggacacagacacaatttacattttcttgagtatgggattttttgtcatttgggaatatcatattctggct |
90 |
Q |
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| T |
42579382 |
ctaatccttacgataattctggacatagacacaatttacattttcttgagtatgggattttttgtcatttgggaatatcatattctggct |
42579471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 42579472 - 42579580
Alignment:
| Q |
131 |
ccaatatttagcccttaaacnnnnnnnnagtgttaacaatatataaaagctttggaattgtggtgaagcctcatgaacaaggacaccatttatctttact |
230 |
Q |
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| T |
42579472 |
ccaatatttagcccttaaacttttttttagtgttaacaatatataaaagctttggaattgtggtgaagcctcacgaacaaggataccatttatctttact |
42579571 |
T |
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| Q |
231 |
cttgaccta |
239 |
Q |
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| T |
42579572 |
cttgaccta |
42579580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 42597575 - 42597625
Alignment:
| Q |
20 |
tggacacagacacaatttacattttcttgagtatgggattttttgtcatttg |
71 |
Q |
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| T |
42597575 |
tggacaca-acacaatctacatttgcttgagtatggaattttttgtcatttg |
42597625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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