View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_79 (Length: 238)
Name: NF3107_low_79
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42579397 - 42579175
Alignment:
| Q |
1 |
ttatcgtaaggattagtaaaatcattaaccatccttattcatttcgtaggattatgattccgttaattaaggaacttgtatccctatgtaaacgtctatt |
100 |
Q |
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| T |
42579397 |
ttatcgtaaggattagtaaaatcattaaccatccttattcatttcgtagggttatgattccgttaattaaggaacttgtatccctatgtaaacgtctatt |
42579298 |
T |
|
| Q |
101 |
taaactgtactattcagctgtaataaacacatgaataaagcaaatatttctacaacgagcataaagaaatctcattttgcatttgttctcttgaatacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
42579297 |
taaactgtactattcagctgtaataaacacatgaataaagcaaatatttctacaacgagcataaagaaatctcattttgcacttgttctcttaaatacag |
42579198 |
T |
|
| Q |
201 |
taggtaaggaaggacaacatatt |
223 |
Q |
| |
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||||||||||| ||||| ||||| |
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| T |
42579197 |
taggtaaggaaagacaaaatatt |
42579175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 42572174 - 42572046
Alignment:
| Q |
95 |
tctatttaaactgtactattcagctgtaataaacacatgaataaagcaaatatttctacaacgagcataaagaaatctcattttgcatttgttctcttga |
194 |
Q |
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| T |
42572174 |
tctatttaaactgtaatattcagctgtaatagacatatgaataaagcaaatatttatacagcaagcataaacaaatctcatgttgcacttgttcgcttta |
42572075 |
T |
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| Q |
195 |
atacagtaggtaaggaaggacaacatatt |
223 |
Q |
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| T |
42572074 |
atacaggaggtaggaaaagacaagatatt |
42572046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 43712930 - 43712790
Alignment:
| Q |
34 |
cttattcatttcgtaggattatgattccgttaattaaggaacttgtatccctatgtaaacgtctatttaaactgtactattcagctgtaataaacacatg |
133 |
Q |
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|||||| |||| ||||||||||||||||||| ||| | || |||| ||||| ||| | | ||||||||||||||| ||||||||||||||| || ||| |
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| T |
43712930 |
cttatttatttattaggattatgattccgttagttacgaaatttgtgtccctgtgtta-cttctatttaaactgtaatattcagctgtaataggcatatg |
43712832 |
T |
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| Q |
134 |
aataaagcaaatatttctacaacgagcataaagaaatctcat |
175 |
Q |
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| T |
43712831 |
aataaagcaaatatttatacagagagcataaacaaatctcat |
43712790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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