View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_8 (Length: 590)
Name: NF3107_low_8
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 574
Target Start/End: Complemental strand, 1959995 - 1959429
Alignment:
| Q |
8 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
107 |
Q |
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| T |
1959995 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
1959896 |
T |
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| Q |
108 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
207 |
Q |
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| T |
1959895 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
1959796 |
T |
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| Q |
208 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataactttgtagcattccatcacgt |
307 |
Q |
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| T |
1959795 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattcaaataactttgtagcattccatcaagt |
1959696 |
T |
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| Q |
308 |
aagaggacagcagttattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaaga |
407 |
Q |
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| T |
1959695 |
aagaggacagcagtgattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctgattataggtaaga |
1959596 |
T |
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| Q |
408 |
ccgattcccaattcgaccgatctagtatagttttgactacttgtttacataggacgccttattcttccttcaaagtcaaaatgatagaccatttctatgt |
507 |
Q |
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| T |
1959595 |
ccgattcccaattcgaccaatctagtatagttttgactacttgtttacataggacgccttattctttcttcaaagtcaaaatgatagaccatttctatgt |
1959496 |
T |
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| Q |
508 |
ctaaaatcaaaatctgaaggatagcaatagagatgatgaaccgtaaagaagatgaagtgatggttat |
574 |
Q |
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| T |
1959495 |
ctaaaatcaaaatctgaaggatagcaatagagatgatgaacggtaaagaagatgaagtgatggttat |
1959429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 2023330 - 2023612
Alignment:
| Q |
8 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
107 |
Q |
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| T |
2023330 |
gagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagcttttatagcacaagttttcagccatcaacaaaactttatggtcctataa |
2023429 |
T |
|
| Q |
108 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctct |
207 |
Q |
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| T |
2023430 |
aggaattagtatcagaagataatcctccaaagtatagggaaacaacagtgcatgattatgtttctttctccatggcaagaggccttgatggaacttctcc |
2023529 |
T |
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| Q |
208 |
tttgccatatttcaagattggaaatttctgatacacacaacaaaggtggtttaacatgtatacaatataattaaaataacttt |
290 |
Q |
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| T |
2023530 |
tttgccatatttcaagattggaaatttctgatacacacaataaaggtggtttaacatgtatgcaatataattaaaataacttt |
2023612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 296 - 574
Target Start/End: Original strand, 2023807 - 2024083
Alignment:
| Q |
296 |
attccatcacgtaagaggacagcagttattaagattatagggatacaaacctattttcttgtggactacgagaaccttgtgaacctcatgttttgcctga |
395 |
Q |
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| T |
2023807 |
attccatcaagtcagaggacagcaacaattaagattatagggatacaaacctattttcttgaggactacaagaaccttgtgaacatcatgta---cccga |
2023903 |
T |
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| Q |
396 |
ttataggtaagaccgattcccaattcgaccgatctagtatagttttgactacttgtttacataggacgccttattcttcc-ttcaaagtcaaaatgatag |
494 |
Q |
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||||||| |||| ||||||||| | ||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||||| ||| |
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| T |
2023904 |
ttatagggcagactgattcccaacttgactgatctagtatagttttgactacttgtttgcataggacaccttattcttcccttcaaaatcaaaatggtag |
2024003 |
T |
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| Q |
495 |
accatttctatgtctaaaatcaaaatctgaaggatagcaatagagatgatgaaccgtaaagaagatgaagtgatggttat |
574 |
Q |
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| T |
2024004 |
atcatttctatgtttaaaatcaaaatctgaaggatagcaatagagatgatgaaccgtaaagaagatgaagtgatggttat |
2024083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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