View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_low_84 (Length: 237)
Name: NF3107_low_84
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_84 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48870593 - 48870814
Alignment:
| Q |
1 |
ctttgagcagtggttactaaaacagataatcataactaaaatcaatatcattttgaaagagaaaaaatgatacattgcagatacaaccacaacataaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48870593 |
ctttgagcagtggttactaaaacagataatcataactaaaatcaatatcattttgaaagagaaaaaatgatacattgcagatacaaccacaacataaaat |
48870692 |
T |
|
| Q |
101 |
ctatgaaatgttactttaaaaataataaatctaattgttggaaaagagttgcattacatcccgcatctaatgaatccaacaatttctatgcaattcaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48870693 |
ctatgaaatgttactttaaaaataataaatctaatcgttggaaaagagttgcattacatcccgcatctaatgaatccaacaatttctatgcaattcaatc |
48870792 |
T |
|
| Q |
201 |
tttgaaatccaaaaaacaacat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48870793 |
tttgaaatccaaaaaacaacat |
48870814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 216
Target Start/End: Complemental strand, 2904539 - 2904401
Alignment:
| Q |
78 |
cagatacaaccacaacataaaatctatgaaatgttactttaaaaa-taataaatctaattgttggaaaagagttgcattacatcccgcatctaatgaatc |
176 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| || ||||| ||| ||||||||| |||||| ||| |||||| ||| | |||||| |||||| |
|
|
| T |
2904539 |
cagatacaaccacatcataaaatctatgatatgttaattaaaaaaataagaaatctaatcattggaatagaattgcatgacaatctgcatctg-tgaatc |
2904441 |
T |
|
| Q |
177 |
caacaatttctatgcaattcaatctttgaaatccaaaaaa |
216 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2904440 |
caacaatttggatgcaattaaatctttgaaatccaaaaaa |
2904401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 2888387 - 2888293
Alignment:
| Q |
122 |
ataataaatctaattgttggaaaagagttgcattacatcccgcatctaatgaatccaacaatttctatgcaattcaatctttgaaatccaaaaaa |
216 |
Q |
| |
|
|||| ||||||||| |||| |||| |||||| ||| | ||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
2888387 |
ataagaaatctaatcattggggaagaattgcatgacaatctgcatctagtgaatccaacaattttgatgaaattaaatctttgaaatccaaaaaa |
2888293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University