View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3107_low_88 (Length: 231)
Name: NF3107_low_88
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_88 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 28284140 - 28284358
Alignment:
| Q |
1 |
gcaaagttgaattaaggaatttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaaga |
100 |
Q |
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| T |
28284140 |
gcaaagttgaattaaggaatttacttgtcaaattcagggtgcatggtgttatcccaccctttaggatcaacaacattactcatagttgagtaagcaaaga |
28284239 |
T |
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| Q |
101 |
taattttaggataagtcatccatgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatac |
200 |
Q |
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| T |
28284240 |
taattttaggataagtcatccatgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatac |
28284339 |
T |
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| Q |
201 |
actttttcttgcctatgct |
219 |
Q |
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|||||||||||||| |||| |
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| T |
28284340 |
actttttcttgcctgtgct |
28284358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 173597 - 173406
Alignment:
| Q |
21 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
120 |
Q |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
173597 |
ttacttgtcaaattcagggtgcatggcgttatcccaccctttgggattaacaacattggtcatagttgagtaagcatagataattttgggataagtcatc |
173498 |
T |
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| Q |
121 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttgc |
212 |
Q |
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| T |
173497 |
catgccctagctaagaaagtggaagatccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcagtttttcttgc |
173406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 179110 - 178919
Alignment:
| Q |
21 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
120 |
Q |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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| T |
179110 |
ttacttgtcaaattcagggtgcatggcgttatcccaccctttgggattaacaacattggtcatagttgagtaagcatagataattttgggataagtcatc |
179011 |
T |
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| Q |
121 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttgc |
212 |
Q |
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| T |
179010 |
catgccctagctaagaaagtggaagatccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcagtttttcttgc |
178919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 212
Target Start/End: Original strand, 31114225 - 31114416
Alignment:
| Q |
21 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtaagcaaagataattttaggataagtcatc |
120 |
Q |
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||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31114225 |
ttacttgtcaaattcagggtgcatgccattatcccatccttttggatgaacaacattggtcatagttgagtaagcatagataattttaggataagtcatc |
31114324 |
T |
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| Q |
121 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttgc |
212 |
Q |
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|||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31114325 |
catgctctagctaagaaagtagtagttccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcactttttcttgc |
31114416 |
T |
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