View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3107_low_9 (Length: 575)
Name: NF3107_low_9
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3107_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 562
Target Start/End: Original strand, 44531991 - 44532538
Alignment:
| Q |
15 |
tcagttgtggatgatgctaacaccattgcatttagtctttgaagtcggctatgtccccggttaatgccatgttgaacgcgctcgagtttagtcaagtttt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44531991 |
tcagttgtggatgatgctaacaccattgcatttagtctttgaagtcggctatgtccccggttaatgccatgttgaacgcgctcgagtttagtcaagtttt |
44532090 |
T |
|
| Q |
115 |
tgccggaatcaacgtggcgaagagtgattcggaacccgccttgagagatttggtgatggttgagagaccctcttgatgttgaggatgttggatgaacaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44532091 |
tgccggaatcaacgtggcgaagagtgattcggaacccgccttgagagatttggtgatggttgagagaccctcttgatgttgagaatgttggatgaacaaa |
44532190 |
T |
|
| Q |
215 |
gagaattgttactagtagtgttaccaacatgacacattttgaacaattttgtgtagccatgaacattaagttatacaaaaaggacttgtataaataatga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44532191 |
gagaattgttactagtagtgttaccaacatgacacattttgaacaattttgtgtagccatgaacattaagttatacaaaaaggacttgtataaataatga |
44532290 |
T |
|
| Q |
315 |
agtaaatgaattatgttgagtgaaggtgaagggtgattggaattgtgggaatatatataacnnnnnnnngctagagaaataatggtatttaggtcttaac |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
44532291 |
agtaaatgaattatgttgagtgaaggtgaagggtgattggaattgtgggaatatatataacttttttttgctagacaaataatggtatttaggtcttaac |
44532390 |
T |
|
| Q |
415 |
tgaagaatcgatttaatcacatgagaaatgggtttcttaattgtaacgttttttccattataatgtggtggagaaggaagataaagggtaaattctctta |
514 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44532391 |
tgaagaatcaatttaatcacatgagaaatgggtttcttaattgtaacgttttttccattatgatgtggtggagaaggaagataaagggtaaattctctta |
44532490 |
T |
|
| Q |
515 |
ctaattagagagacgtaataggtatagtggtgaatgggaagttaagat |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44532491 |
ctaattagagagacgtaataggtatagtggtgaatgggaagttaagat |
44532538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University