View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3107_low_93 (Length: 223)

Name: NF3107_low_93
Description: NF3107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3107_low_93
NF3107_low_93
[»] chr3 (4 HSPs)
chr3 (20-136)||(35990512-35990628)
chr3 (163-208)||(35990654-35990699)
chr3 (35-95)||(18268007-18268067)
chr3 (35-91)||(51733145-51733201)
[»] chr5 (1 HSPs)
chr5 (33-93)||(31614135-31614195)
[»] scaffold0205 (1 HSPs)
scaffold0205 (35-77)||(21431-21473)
[»] chr8 (1 HSPs)
chr8 (55-97)||(2512757-2512799)
[»] chr7 (2 HSPs)
chr7 (33-91)||(46179910-46179968)
chr7 (33-89)||(3262875-3262931)
[»] chr1 (2 HSPs)
chr1 (33-91)||(43328468-43328526)
chr1 (40-96)||(26462652-26462708)
[»] chr4 (1 HSPs)
chr4 (33-77)||(24875739-24875783)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 35990512 - 35990628
Alignment:
Q  20 tccaacacttactcgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttgacggggtagtgtggtgtctggtgtca 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |    
T  35990512 tccaacacttactcgacactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgacggggtagtgtggtgtctggtgtta 35990611  T
Q  120 gtgtttcgtagaaatgg 136  Q
    |||||||||||||||||    
T  35990612 gtgtttcgtagaaatgg 35990628  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 35990654 - 35990699
Alignment:
Q  163 gtttgctgtaatgagttgattttatggatgtgtaacttatcattga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35990654 gtttgctgtaatgagttgattttatggatgtgtaacttatcattga 35990699  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 18268007 - 18268067
Alignment:
Q  35 acactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttgac 95  Q
    |||| |||||||||| | || |||| ||| || |||||||||| |||||||||||||||||    
T  18268007 acaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgttgac 18268067  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 51733201 - 51733145
Alignment:
Q  35 acactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt 91  Q
    |||| ||||||| |||| || |||| ||||| |||||||||||||||||||| ||||    
T  51733201 acaccgacacatctggtaacgttcaattattctattttctcaagttattatcggtgt 51733145  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 31614195 - 31614135
Alignment:
Q  33 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttg 93  Q
    |||||||||||||| |||| ||| | |||||||| ||||||||||  ||||||||||||||    
T  31614195 cgacactgacacatatggttacaattagttatttcattttctcaaactattatcagtgttg 31614135  T

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Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 21473 - 21431
Alignment:
Q  35 acactgacacatgtggtgacattcagttattttattttctcaa 77  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||    
T  21473 acactgatacatgtggttacattcaattattttattttctcaa 21431  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 2512799 - 2512757
Alignment:
Q  55 attcagttattttattttctcaagttattatcagtgttgacgg 97  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||    
T  2512799 attcaattattttattttctcaaattattaccagtgttgacgg 2512757  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 46179910 - 46179968
Alignment:
Q  33 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt 91  Q
    |||||| |||||||||| | | ||||| ||| ||||||||||||| |||||||||||||    
T  46179910 cgacaccgacacatgtgattatattcaattaatttattttctcaacttattatcagtgt 46179968  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 3262875 - 3262931
Alignment:
Q  33 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagt 89  Q
    |||||||||||||||||||  ||||||  ||||| | |||||||| |||||||||||    
T  3262875 cgacactgacacatgtggttgcattcaaatatttcactttctcaaattattatcagt 3262931  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 43328526 - 43328468
Alignment:
Q  33 cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt 91  Q
    ||||| ||||||||||||| ||||| | |||||| |||||||||| ||||||| |||||    
T  43328526 cgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgt 43328468  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 26462652 - 26462708
Alignment:
Q  40 gacacatgtggtgacattcagttattttattttctcaagttattatcagtgttgacg 96  Q
    |||||||||| | ||||||| |||||| ||||||| || ||||||||||||| ||||    
T  26462652 gacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacg 26462708  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 24875783 - 24875739
Alignment:
Q  33 cgacactgacacatgtggtgacattcagttattttattttctcaa 77  Q
    ||||||||| ||||||||| ||||||| ||||| |||||||||||    
T  24875783 cgacactgatacatgtggttacattcaattattctattttctcaa 24875739  T

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