View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3108_high_4 (Length: 382)
Name: NF3108_high_4
Description: NF3108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3108_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 43099823 - 43100177
Alignment:
| Q |
18 |
gatgaagtattgtaattgaacaatatttgtttgtcatagcaaaatggattttagtgactgatgaaatgaggtaattgattaatttaagagtctagagcac |
117 |
Q |
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| T |
43099823 |
gatgaagtattgtaattgaacaatatttgtttgtcatagcaaaatggattttagtgactgatgaaatgaggtaattgattaatttaagagtctagtgcac |
43099922 |
T |
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| Q |
118 |
acatttgacatcgaagcattaggcttattttgcgtggtaccaaagaattcagtgtctatttcatcttggtttcctgaatagtcttggttgtttgaaagct |
217 |
Q |
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| T |
43099923 |
acatttgacatcgaagcattaggcttattttgcgtggtaccaaagaattcagtgtctatttcatcttggtttcctgaatagtcttggttgtttgaaagct |
43100022 |
T |
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| Q |
218 |
acaatttccaaatgaaatatatcaacaccaaaaatcttatatctaaaaattttaatcattaattcaaattatagggtgatctcatatattgagacatttg |
317 |
Q |
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| T |
43100023 |
acaatttccaaatgaaatatataaacaccaaaaatcttatatctaaaaattttaatcattaattcaaattatagggtgatctcatatattgagacatttg |
43100122 |
T |
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| Q |
318 |
atttcatatacctgatgtagagtcgagccagattgttgataattcctggtttcat |
372 |
Q |
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| T |
43100123 |
atttcatatacctgatgtagagtcgagccagattgttaataattcctggtttcat |
43100177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 40871065 - 40870951
Alignment:
| Q |
139 |
ggcttattttgcgtggtaccaaagaattcagtgtctatttcatcttggtttcctgaatagtcttggttgtttgaaagctacaatttccaaatgaaat--a |
236 |
Q |
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| T |
40871065 |
ggcttatcttgtgtagtaccaaggaactcaatgtctatttcatcatgggttcctttgtgatcttctatgtttgaaagctacaattcccaaatgaaattaa |
40870966 |
T |
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| Q |
237 |
tatcaacaccaaaaa |
251 |
Q |
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| T |
40870965 |
tatcaacaccaaaaa |
40870951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 40870425 - 40870379
Alignment:
| Q |
306 |
ttgagacatttgatttcatatacctgatgtagagtcgagccagattg |
352 |
Q |
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| T |
40870425 |
ttgagacatttgatttcatatacctgtggtagagtcaagccagattg |
40870379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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