View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3108_high_6 (Length: 316)
Name: NF3108_high_6
Description: NF3108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3108_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 9821715 - 9821416
Alignment:
| Q |
1 |
attagggtttattgttgaaggcttattacttgtaacccttgtatcgctttgtaagatactcattgatgatgaattgaagagatgctctcccccaagacgt |
100 |
Q |
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| T |
9821715 |
attagggtttattgttaaaggcttattacttgtaacccttgtattgctttgtaagatactcattgatgatgaattgaagagatgctctcccccaagacgt |
9821616 |
T |
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| Q |
101 |
aattaaatttggtcagaaatggatgcacaaaaatgcggtgttcgttcttcttctttatcttatttcttattgtcatccgtctttgaaatggatacacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821615 |
aattaaatttggtcagaaatggatgcacaaaaatgtggtgttcgttcttcttctttatcttatttcttattgtcatccgtctttgaaatggatacacaaa |
9821516 |
T |
|
| Q |
201 |
aatgtgacttacaatgagttgattcaaatgggtgctaatccatctttgaaatgtcttatattgtgctccaccttcccggaccaaagattatgcagataat |
300 |
Q |
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| T |
9821515 |
aatgtgacttacaatgagttgattcaaatgggtgttaatccatctttgaaatgtcttatattgtgctccaccttcccggaccaaagattatgcagataat |
9821416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 38860493 - 38860405
Alignment:
| Q |
1 |
attagggtttattgttgaaggcttattacttgtaacccttgtatcgctttgtaagatactcattgatgatgaattgaagagatgctctc |
89 |
Q |
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| T |
38860493 |
attagggtttattgttgaaggctaatttcttataactattgtatctctttgtaagaaactatttgatagtggattggagagctgctctc |
38860405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 38984808 - 38984662
Alignment:
| Q |
1 |
attagggtttattgttgaaggcttattacttgtaacccttgtatcgctttgtaagatactcattgatgatgaattgaagagatgctctcccccaagacgt |
100 |
Q |
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|||||||||||||||| ||| |||||| ||||||||| ||| ||| ||||||||||||| |||||| || ||||| |||||| |||||| ||||||| |
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| T |
38984808 |
attagggtttattgttaaagacttatttcttgtaaccattgaatcactttgtaagatacacattgaaaattaattggagagatattctcccttaagacgt |
38984709 |
T |
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| Q |
101 |
aattaaatttggtcagaaatggatgcacaaaaatgcggtgttcgttc |
147 |
Q |
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| T |
38984708 |
aagtaaatttgggaagaaatgaatatacaaatatgtggtgttcgttc |
38984662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 38875865 - 38875814
Alignment:
| Q |
249 |
aaatgtcttatattgtgctccaccttcccggaccaaagattatgcagataat |
300 |
Q |
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| T |
38875865 |
aaatgtcttatattgtgctccaccttcccgaaccaaagactatgctgataat |
38875814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 38875932 - 38875890
Alignment:
| Q |
211 |
acaatgagttgattcaaatgggtgctaatccatctttgaaatg |
253 |
Q |
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| T |
38875932 |
acaatgagttgattcaaatgggtattaatccatctttgaaatg |
38875890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 38985631 - 38985565
Alignment:
| Q |
1 |
attagggtttattgttgaaggcttattacttgtaacccttgtatcgctttgtaagatactcattgat |
67 |
Q |
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||||||||||||| |||||| ||||| ||||||||| ||||||| |||||||||||| | |||||| |
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| T |
38985631 |
attagggtttattattgaagatttatttcttgtaaccattgtatctctttgtaagatatttattgat |
38985565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 8832228 - 8832296
Alignment:
| Q |
13 |
tgttgaaggcttattacttgtaacccttgtatcgctttgtaagatactcattgatgatgaattgaagag |
81 |
Q |
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| T |
8832228 |
tgttgaagacttatttcttgtaacccttgtatctatttgtaaagaacttattgatagtgaattgaagag |
8832296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 24197946 - 24198017
Alignment:
| Q |
12 |
ttgttgaaggcttattacttgtaacccttgtatcgctttgtaagatactcattgatgatgaattgaagagat |
83 |
Q |
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| T |
24197946 |
ttgttgaaggctaatttcttgtaacccttgtatctctttgcaagaaactctttgataatggattggagagat |
24198017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 16605631 - 16605711
Alignment:
| Q |
1 |
attagggtttattgttgaaggcttattacttgtaacccttgtatcgctttgtaagatactcattgatgatgaattgaagag |
81 |
Q |
| |
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|||| |||||||||||||||| ||| |||||||| ||||||| |||| ||||| |||||||||| ||| |||| |||| |
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| T |
16605631 |
attaaggtttattgttgaaggacaatttcttgtaactcttgtatatctttataagaaactcattgataatggattggagag |
16605711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3904187 - 3904270
Alignment:
| Q |
1 |
attagggtttattgttgaaggcttattacttgtaacccttgtatcgctttgtaagat--actcattgatgatgaattgaagaga |
82 |
Q |
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|||||||||||||||| |||| | ||| |||||||||||||||| ||| |||| || |||||||||| ||||||| ||||| |
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| T |
3904187 |
attagggtttattgtttaaggttaattttttgtaacccttgtatctcttagtaatataaactcattgatattgaattggagaga |
3904270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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