View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3108_low_1 (Length: 642)
Name: NF3108_low_1
Description: NF3108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3108_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 26 - 634
Target Start/End: Original strand, 36458514 - 36459122
Alignment:
| Q |
26 |
gttaagatgcttaagaattcctccaatcgagacggtaagtaattctgagtcaaaatcttaactagatacccaaaatcatatgagctgtgaaatgtaaccc |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36458514 |
gttaagatgcttaagaattcctccaatcgagacggtaagtaattctgagtcaaaatcttaactagatacccaaaatcatatgagctgtgaaatgtaaccc |
36458613 |
T |
|
| Q |
126 |
aagaaactccactgttgactagtccagacttcagcctgaataatttagaaaattctagagaatcgacaccgtaaattaaattacgtttaaaatcaacgcc |
225 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
36458614 |
aagaaactccactgttgactagtccagacttcagtctgaataatttagcaaattctagagaatcgacaccgtaaattaaattacgtttaaaatcgatgcc |
36458713 |
T |
|
| Q |
226 |
ttgacgacgaagcaattcgatagagtctggattttgaagatcacgctccacgtcaaaatctttgaaattaaattcccaaatatagctgtatgcatgatct |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36458714 |
ttgacgacgaagcaattcgatagagtctggattttgaagatcacggtccacgtcaaaatctttgaaattaaattcccaaatatagctgtatgcaacatct |
36458813 |
T |
|
| Q |
326 |
ccaggtaggttaccatttgcatcagtgagagtaagacctagttgaatcaacttgagattatccacgttagccttcaagaaactgtactgttctgatggat |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36458814 |
ccaggtaggttaccatttgcatcagtgagagtaagacctagttgaatcaagttgagattatccacgttagccttcaagaaactgtactgttctgatggat |
36458913 |
T |
|
| Q |
426 |
ccatatggcggaggtgatacggtatattgggatcaaagttaggtgcaacgacgacaccaggaaactcggtatccattgatacatagggaaacatgtgaac |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36458914 |
ccatatggcggaggtgatacggtatattgggatcaaagttaggtgcaacgacgacaccaggaaactcggtatccattgatacatagggaaacatgtgaac |
36459013 |
T |
|
| Q |
526 |
gaaatttcttataagatcaaattcacgcttcagattttcagcccacacctgacgaatcttaataggtttagttgaagcatctttctccttcactttggtc |
625 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |
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| T |
36459014 |
gaaatctcttataagatcaaattcacgctccagattttcagcccacacctgacgaatcttaataggtttatttgaagcatcctcctccttcactttggtc |
36459113 |
T |
|
| Q |
626 |
atgatgatg |
634 |
Q |
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||||||||| |
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| T |
36459114 |
atgatgatg |
36459122 |
T |
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