View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3108_low_10 (Length: 234)
Name: NF3108_low_10
Description: NF3108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3108_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 485899 - 485696
Alignment:
| Q |
16 |
gagatgaagcatgctgtcatttaaaaaattagtgaatatattgagatcttgtatgtagatggaaaaataagggctggggacaaagtttttccattctttt |
115 |
Q |
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| T |
485899 |
gagaagaagcatgctgtcatttaaaaaattagtgaatatattgagatcttgtatgtagatggaaaaataagggctagggacaaagtttttccattctttt |
485800 |
T |
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| Q |
116 |
aaaactcagaacaagaactttgactttcaaaagttagaattcaggatttgatgttggctatttgaattgaattcaggccatgttagttttaagcgtgaac |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
485799 |
aaaattcagaacaagaactttgactttcaaaagttagaattcaggatttgatgttggctatttgaattgaattcaggtcatgttagttttaagcgtaaac |
485700 |
T |
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| Q |
216 |
atag |
219 |
Q |
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|||| |
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| T |
485699 |
atag |
485696 |
T |
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