View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3108_low_2 (Length: 558)
Name: NF3108_low_2
Description: NF3108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3108_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 219 - 549
Target Start/End: Complemental strand, 11346798 - 11346465
Alignment:
| Q |
219 |
ttcaacctctatatcacttttccgaactatatatttgcaggaaaagtgaccaaatattgttgatgttatacatctttaataatcaattcccttattaaca |
318 |
Q |
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| T |
11346798 |
ttcaacctctatgtcacttttccggactatatgtttgcaggaaaagtgatcaaatattgttgatgttatacatctttaataatcaattcccttattaaca |
11346699 |
T |
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| Q |
319 |
caaaaaagacaataatcctattgttacaagtactaaaatagtcgatctagtttctttttatattctttgttttgattttgagattttctaaacaagcgtc |
418 |
Q |
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| T |
11346698 |
caaaaaagacaataatcctattgttacaagtactaaaatagtcgatctagtttctttttatattctttgttttgattttgagattttctgaacaagcg-- |
11346601 |
T |
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| Q |
419 |
atcattcttctcagataaatttcttattactccgaataatccta------agcgtcggcgtcaatgtcttatgcgaaattgtaaaatccaaaggacaaac |
512 |
Q |
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| T |
11346600 |
-ccattcttctcagataaatttcttattactccgaataaccttaggcgttggcgtcggcgtcaatgtcttatgcgaaattgtaaaatccaaaggacaaac |
11346502 |
T |
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| Q |
513 |
aatttccaacaactcctgccaataatgttcttctgtg |
549 |
Q |
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| T |
11346501 |
aatttccaacaactcctgccaataatgttcttctgtg |
11346465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 11347093 - 11346976
Alignment:
| Q |
47 |
agaagaaggggacaaccattgttatcaagaaatacgaggaaattgagggattatccttgaacatgttgtttcattcatagtgtttggtgcttttcattgc |
146 |
Q |
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| T |
11347093 |
agaagaaggggacaaccattgttatcaggaaatacgaggaaattgtgggattatccttgaacatgttgtttcattcatagtgtttggtgcttgtcattgc |
11346994 |
T |
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| Q |
147 |
tatcataattccaagcca |
164 |
Q |
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| T |
11346993 |
tatcatacttccaagcca |
11346976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 269 - 549
Target Start/End: Complemental strand, 40359550 - 40359264
Alignment:
| Q |
269 |
caaatattg-ttgatgttatacatctttaataatcaattcccttattaacacaaaaaagacaataatcctattgttacaagtactaaaatagtcgatcta |
367 |
Q |
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| T |
40359550 |
caaatattgattgatgccatgcatctttaataattaattcacttactaatacaaaaacaacaacaatccaattgttacaagtacaacaatagtcaatcca |
40359451 |
T |
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| Q |
368 |
gtttctttttatattctttgttttgattttgagattttctaaacaagcgtcatcattcttctca--------gataaatttcttattactccgaataatc |
459 |
Q |
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| T |
40359450 |
atttctttttgttttctttgttttaattttgagattttttaaacaag---caccattcttttcaaatctacgaatagatttcttattattccgaataacc |
40359354 |
T |
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| Q |
460 |
ctaagcgtcggcgtcaatgtcttatgcgaaattgtaaaatccaaaggacaaacaatttccaacaactcctgccaataatgttcttctgtg |
549 |
Q |
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| T |
40359353 |
ctagacatcggtgccaacgtcttatgcagaattgtaatatcaaaaggacaaacaaactccaacaactcctgccaatgaagttctcctgtg |
40359264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 40363661 - 40363583
Alignment:
| Q |
327 |
acaataatcctattgttacaagtactaaaatagtcgatctagtttctttttatattctttgttttgattttgagatttt |
405 |
Q |
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| T |
40363661 |
acaataatcctattgttacaagtacaacaatagtcaatctagtttctttttgttttctttgttttatttttgagatttt |
40363583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 337
Target Start/End: Complemental strand, 40363750 - 40363682
Alignment:
| Q |
269 |
caaatattgttgatgttatacatctttaataatcaattcccttattaacacaaaaaagacaataatcct |
337 |
Q |
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| T |
40363750 |
caaatattgttgatgtcatacatctttaataaccaatgctcttattaatacaaaaacaacaataatcct |
40363682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 549
Target Start/End: Complemental strand, 40363505 - 40363434
Alignment:
| Q |
479 |
tcttatgcgaaattgtaaaatccaaaggacaaac-aatttccaacaactcctgccaataatgttcttctgtg |
549 |
Q |
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| T |
40363505 |
tcttatggaaaatcgtaacatccaaaggacaaaataatttccaacaactccttccaataaagttcgtctgtg |
40363434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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