View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3108_low_3 (Length: 515)
Name: NF3108_low_3
Description: NF3108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3108_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Original strand, 36458633 - 36459122
Alignment:
| Q |
18 |
tagtccagacttcagcctgaataatttagaaaattctagagaatcgacaccgtaaattaaattacgtttaaaatcaacgccttgacgacgaagcaattcg |
117 |
Q |
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| T |
36458633 |
tagtccagacttcagtctgaataatttagcaaattctagagaatcgacaccgtaaattaaattacgtttaaaatcgatgccttgacgacgaagcaattcg |
36458732 |
T |
|
| Q |
118 |
atagagtctggattttgaagatcacgctccacgtcaaaatctttgaaattaaattcccaaatatagctgtatgcatgatctccaggtaggttaccatttg |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36458733 |
atagagtctggattttgaagatcacggtccacgtcaaaatctttgaaattaaattcccaaatatagctgtatgcaacatctccaggtaggttaccatttg |
36458832 |
T |
|
| Q |
218 |
catcagtgagagtaagacctagttgaatcaacttgagattatccacgttagccttcaagaaactgtactgttctgatggatccatatggcggaggtgata |
317 |
Q |
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| T |
36458833 |
catcagtgagagtaagacctagttgaatcaagttgagattatccacgttagccttcaagaaactgtactgttctgatggatccatatggcggaggtgata |
36458932 |
T |
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| Q |
318 |
cggtatattgggatcaaagttaggtgcaacgacgacaccaggaaactcggtatccattgatacatagggaaacatgtgaacgaaatttcttataagatca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36458933 |
cggtatattgggatcaaagttaggtgcaacgacgacaccaggaaactcggtatccattgatacatagggaaacatgtgaacgaaatctcttataagatca |
36459032 |
T |
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| Q |
418 |
aattcacgcttcagattttcagcccacacctgacgaatcttaataggtttagttgaagcatctttctccttcactttggtcatgatgatg |
507 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| |
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| T |
36459033 |
aattcacgctccagattttcagcccacacctgacgaatcttaataggtttatttgaagcatcctcctccttcactttggtcatgatgatg |
36459122 |
T |
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