View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3108_low_5 (Length: 346)

Name: NF3108_low_5
Description: NF3108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3108_low_5
NF3108_low_5
[»] chr6 (2 HSPs)
chr6 (33-331)||(10357411-10357709)
chr6 (136-178)||(33113321-33113363)
[»] chr7 (2 HSPs)
chr7 (40-305)||(26156651-26156916)
chr7 (220-261)||(41450783-41450824)
[»] scaffold1610 (1 HSPs)
scaffold1610 (56-320)||(645-911)
[»] scaffold1605 (1 HSPs)
scaffold1605 (56-320)||(668-934)
[»] chr1 (2 HSPs)
chr1 (56-320)||(20443209-20443475)
chr1 (136-178)||(38548161-38548203)
[»] chr5 (1 HSPs)
chr5 (42-260)||(19109937-19110155)
[»] chr3 (3 HSPs)
chr3 (47-196)||(11821765-11821914)
chr3 (1-36)||(39280752-39280787)
chr3 (136-178)||(55167425-55167467)
[»] chr2 (2 HSPs)
chr2 (79-257)||(14849095-14849273)
chr2 (132-199)||(38696485-38696552)
[»] chr8 (1 HSPs)
chr8 (142-206)||(10124290-10124354)
[»] scaffold0436 (2 HSPs)
scaffold0436 (131-184)||(9691-9744)
scaffold0436 (131-184)||(13826-13879)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 33 - 331
Target Start/End: Original strand, 10357411 - 10357709
Alignment:
Q  33 agccgagaaatccattctacccaaaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacga 132  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10357411 agccgagaaatccgttctacccaaaagccaccttcacaagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacga 10357510  T
Q  133 tcattccgagctttccacataacccatatagccgcttgccaaatcaatctccaccctttccgaatcttcttatggtaaccttctatgttccaacactccc 232  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  10357511 tcattctgagctttccacataacccatatagccgcttgccaaatcaatctccaccctttccgaatcttcttatggtaacctcccaagttccaacactccc 10357610  T
Q  233 aaagaataaacaaattcggaggaattaaacaccaccgatttgtccacctcatcaaccgcgaccaaatatccttcgccaaattacaatgaagggaaagat 331  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10357611 aaagaataaacaaattcggaggaattaaacaccatcgatttgtccacctcatcaaccgcgaccaaatatccttcgccaaattacaatgaagggaaagat 10357709  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 33113321 - 33113363
Alignment:
Q  136 ttccgagctttccacataacccatatagccgcttgccaaatca 178  Q
    ||||| ||||||||||||||||| || ||||||||||||||||    
T  33113321 ttccgcgctttccacataacccaaatcgccgcttgccaaatca 33113363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 40 - 305
Target Start/End: Complemental strand, 26156916 - 26156651
Alignment:
Q  40 aaatccattctacccaaaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattcc 139  Q
    |||||| |||||| |||||||||||||||||| || | ||||||||||||||||||||| || |||||||||||||   |  |||| ||||||||||| |    
T  26156916 aaatccgttctactcaaaagccacctccacgaaagtagttgaatctcttcaactagatcgtcaactcctttaccaccaccagtgaaaacacgatcatttc 26156817  T
Q  140 gagctttccacataacccatatagccgcttgccaaatcaatctccaccctttccgaatcttcttatggtaaccttctatgttccaacactcccaaagaat 239  Q
    | |||||||| |||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||| ||| | | |||||||||||||||| ||||    
T  26156816 gtgctttccaaataatccatatcgccgcttgccaaatcaatctccaccctttcctaaccttcttatggtagcctcccaagttccaacactcccaatgaat 26156717  T
Q  240 aaacaaattcggaggaattaaacaccaccgatttgtccacctcatcaaccgcgaccaaatatcctt 305  Q
    |||||||||||||| ||||||  |||||||||| |||||||||||||| ||| ||||||| |||||    
T  26156716 aaacaaattcggagaaattaacaaccaccgattcgtccacctcatcaaacgcaaccaaatttcctt 26156651  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 41450824 - 41450783
Alignment:
Q  220 ttccaacactcccaaagaataaacaaattcggaggaattaaa 261  Q
    |||||||| | |||||||||||||||||| ||||||||||||    
T  41450824 ttccaacattgccaaagaataaacaaatttggaggaattaaa 41450783  T

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Target: scaffold1610 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold1610
Description:

Target: scaffold1610; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 320
Target Start/End: Original strand, 645 - 911
Alignment:
Q  56 aaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaaga--cacgatcattccgagctttccacata 153  Q
    |||||||||||||||| |||||||||||||||||||| || || ||||| |||||    |  | |||||| |  ||| |||||| ||||| ||||| ||     
T  645 aaagccacctccacgaaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatc 744  T
Q  154 acccatatagccgcttgccaaatcaatctccaccctttccgaatcttcttatggtaaccttctatgttccaacactcccaaagaataaacaaattcggag 253  Q
    ||| | || ||||||||||||||||| ||||||||||| | |   |||||| |||||||| | |  |||||||| |||||| ||||||||||||| ||||    
T  745 acctaaatcgccgcttgccaaatcaaactccacccttttctagatttcttacggtaacctcccacattccaacattcccaatgaataaacaaattgggag 844  T
Q  254 gaattaaacaccaccgatttgtccacctcatcaaccgcgaccaaatatccttcgccaaattacaatg 320  Q
    |||||| | |||| || ||||||||||||||||| |   ||||||| ||||||||||||| ||||||    
T  845 gaattagaaaccaacggtttgtccacctcatcaaacataaccaaatctccttcgccaaatcacaatg 911  T

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Target: scaffold1605 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold1605
Description:

Target: scaffold1605; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 320
Target Start/End: Complemental strand, 934 - 668
Alignment:
Q  56 aaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaaga--cacgatcattccgagctttccacata 153  Q
    |||||||||||||||| |||||||||||||||||||| || || ||||| |||||    |  | |||||| |  ||| |||||| ||||| ||||| ||     
T  934 aaagccacctccacgaaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatc 835  T
Q  154 acccatatagccgcttgccaaatcaatctccaccctttccgaatcttcttatggtaaccttctatgttccaacactcccaaagaataaacaaattcggag 253  Q
    ||| | || ||||||||||||||||| ||||||||||| | |   |||||| |||||||| | |  |||||||| |||||| ||||||||||||| ||||    
T  834 acctaaatcgccgcttgccaaatcaaactccacccttttctagatttcttacggtaacctcccacattccaacattcccaatgaataaacaaattgggag 735  T
Q  254 gaattaaacaccaccgatttgtccacctcatcaaccgcgaccaaatatccttcgccaaattacaatg 320  Q
    |||||| | |||| || ||||||||||||||||| |   ||||||| ||||||||||||| ||||||    
T  734 gaattagaaaccaacggtttgtccacctcatcaaacataaccaaatctccttcgccaaatcacaatg 668  T

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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 320
Target Start/End: Complemental strand, 20443475 - 20443209
Alignment:
Q  56 aaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttaccacactcgttgaaga--cacgatcattccgagctttccacata 153  Q
    |||||||||||||||| |||||||||||||||||||| || || ||||| |||||    |  | |||||| |  ||| |||||| ||||| ||||| ||     
T  20443475 aaagccacctccacgaaagaacttgaatctcttcaacaagctcttccacccctttcagtccattgttgaaaatacacaatcatttcgagcattccaaatc 20443376  T
Q  154 acccatatagccgcttgccaaatcaatctccaccctttccgaatcttcttatggtaaccttctatgttccaacactcccaaagaataaacaaattcggag 253  Q
    ||| | || ||||||||||||||||| ||||||||||| | |   |||||| |||||||| | |  |||||||| |||||| ||||||||||||| ||||    
T  20443375 acctaaatcgccgcttgccaaatcaaactccacccttttctagatttcttacggtaacctcccacattccaacattcccaatgaataaacaaattgggag 20443276  T
Q  254 gaattaaacaccaccgatttgtccacctcatcaaccgcgaccaaatatccttcgccaaattacaatg 320  Q
    |||||| | |||| || ||||||||||||||||| |   ||||||| ||||||||||||| ||||||    
T  20443275 gaattagaaaccaacggtttgtccacctcatcaaacataaccaaatctccttcgccaaatcacaatg 20443209  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 38548203 - 38548161
Alignment:
Q  136 ttccgagctttccacataacccatatagccgcttgccaaatca 178  Q
    ||||| ||||||||||||||||| || ||||||||||||||||    
T  38548203 ttccgcgctttccacataacccaaattgccgcttgccaaatca 38548161  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 260
Target Start/End: Original strand, 19109937 - 19110155
Alignment:
Q  42 atccattctacccaaaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttacc-acactcgttgaagacacgatcattccg 140  Q
    |||| |||||| ||||| |||||||||||| |  |||||||||||||| | |||||||||||  | |||| | ||| | |||||| | |||||| || |     
T  19109937 atccgttctacacaaaaaccacctccacgaaatcacttgaatctcttctaatagatcatccatgcttttaacgacatt-gttgaaaatacgatcgtttct 19110035  T
Q  141 agctttccacataacccatatagccgcttgccaaatcaatctccaccctttccgaa-tcttcttatggtaaccttctatgttccaacactcccaaagaat 239  Q
    |||||||||||||||||| || |||||||||||||||| |||||| |||||||||| |||| || || || ||  | || |||||||||| |||| ||||    
T  19110036 agctttccacataacccaaattgccgcttgccaaatcattctccaacctttccgaactctt-ttgtgatagccaccaatattccaacacttccaatgaat 19110134  T
Q  240 aaacaaattcggaggaattaa 260  Q
     ||||||||||| || |||||    
T  19110135 gaacaaattcggggggattaa 19110155  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 11821914 - 11821765
Alignment:
Q  47 ttctacccaaaagccacctccacgagagaacttgaatctcttcaactagatcatccactcctttacc-acactcgttgaagacacgatcattccgagctt 145  Q
    |||||||||||| |||||||||||| |  |||||||||| ||| | |||||||||||| | |||| | ||| | |||||| | |||||| || | | |||    
T  11821914 ttctacccaaaaaccacctccacgaaatcacttgaatctattctaatagatcatccacgcttttagcgacatt-gttgaaaatacgatcgtttctatctt 11821816  T
Q  146 tccacataacccatatagccgcttgccaaatcaatctccaccctttccgaa 196  Q
    ||||||||||||| || |||||||||||||||| |||||| || |||||||    
T  11821815 tccacataacccaaattgccgcttgccaaatcattctccaaccattccgaa 11821765  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39280752 - 39280787
Alignment:
Q  1 aaccaattccaccacttctccaacaccaagacagcc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39280752 aaccaattccaccacttctccaaaaccaagacagcc 39280787  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 55167425 - 55167467
Alignment:
Q  136 ttccgagctttccacataacccatatagccgcttgccaaatca 178  Q
    ||||| ||||||||||||||||| || ||||||||||||||||    
T  55167425 ttccgcgctttccacataacccaaatcgccgcttgccaaatca 55167467  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 14849095 - 14849273
Alignment:
Q  79 tgaatctcttcaactagatcatccactcctttaccacactcgttgaagacacgatcattccgagctttccacataacccatatagccgcttgccaaatca 178  Q
    |||||||||||||| |  || ||||| |||||| ||   || ||||| | ||| ||||| || | |||||| |||||||| |  || |||||||||||||    
T  14849095 tgaatctcttcaaccaactcctccacccctttaacaacatcattgaacatacggtcattacgtgttttccaaataacccaaacggcggcttgccaaatca 14849194  T
Q  179 atctccaccctttccgaatcttcttatggtaaccttctatgttccaacactcccaaagaataaacaaattcggaggaat 257  Q
     |||||| ||  |||| |||||||||||||| ||| |     |||||||||||||| ||||||||||||||||||||||    
T  14849195 ttctccaacccctccggatcttcttatggtaccctcccgcactccaacactcccaatgaataaacaaattcggaggaat 14849273  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 38696485 - 38696552
Alignment:
Q  132 atcattccgagctttccacataacccatatagccgcttgccaaatcaatctccaccctttccgaatct 199  Q
    ||||||||  |||||||||||| ||||||| |||||||||||||||| |||| | |||||||| ||||    
T  38696485 atcattcctcgctttccacatagcccatattgccgcttgccaaatcattctcaagcctttccggatct 38696552  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 10124354 - 10124290
Alignment:
Q  142 gctttccacataacccatatagccgcttgccaaatcaatctccaccctttccgaatcttcttatg 206  Q
    |||||||||||| |||| ||| ||||||||||||||| |||| | || ||||||||||| |||||    
T  10124354 gctttccacatagcccaaataaccgcttgccaaatcattctcaagcccttccgaatctttttatg 10124290  T

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Target: scaffold0436 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 9691 - 9744
Alignment:
Q  131 gatcattccgagctttccacataacccatatagccgcttgccaaatcaatctcc 184  Q
    |||||||||| |||||||| || ||||| ||||| ||||||||||||| |||||    
T  9691 gatcattccgcgctttccaaatcacccaaatagcagcttgccaaatcattctcc 9744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 13826 - 13879
Alignment:
Q  131 gatcattccgagctttccacataacccatatagccgcttgccaaatcaatctcc 184  Q
    |||||||||| |||||||| || ||||| ||||| ||||||||||||| |||||    
T  13826 gatcattccgcgctttccaaatcacccaaatagcagcttgccaaatcattctcc 13879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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