View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3108_low_6 (Length: 342)
Name: NF3108_low_6
Description: NF3108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3108_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 44974790 - 44975107
Alignment:
| Q |
9 |
agcagagagatcagatacaagagttcaaggattcatgaaatttgtacactttttagaaggttttggaagatcatataccgaacaaaacaactactgttga |
108 |
Q |
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| T |
44974790 |
agcagagagatcagatacaagagttcaaggattcatgaaatttgtacactttttagaagattttggaagatcatataccgaacaaaacaactactgttga |
44974889 |
T |
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| Q |
109 |
caaacacagcagaagcattacttgttggtcttgttttaggaacaatttacataaacattgggtttgataaagaagggattgagaaaaggtttggtctttt |
208 |
Q |
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| T |
44974890 |
caaacacagcagaagcattacttgttggtcttgttttaggaacaatttacataaacattgggtttgataaagaagggattgagaaaaggtttggtctttt |
44974989 |
T |
|
| Q |
209 |
tgcattcactctaacattcctcttatcttccacaactgaaacacttccaatctttatcaatgagagaccaatcttgttaagagaaacatcaagtggtgtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44974990 |
tgcattcactctaacattcctcttatcttccacaactgaaacacttccaatctttatcaatgagagaccaatcttgttaagagaaacatcaagtggtgtt |
44975089 |
T |
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| Q |
309 |
tataggctatcatcttat |
326 |
Q |
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|||||||||||||||||| |
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| T |
44975090 |
tataggctatcatcttat |
44975107 |
T |
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