View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3109_high_1 (Length: 815)
Name: NF3109_high_1
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3109_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 757; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 1 - 800
Target Start/End: Original strand, 42798433 - 42799230
Alignment:
| Q |
1 |
tataagttcatttagacctttcttttccaatctgctgttataatgctccatattattggggttgcgtagcagaattaggaaaatcttgatccatgacagg |
100 |
Q |
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| T |
42798433 |
tataagttcatttagacctttcttttccaatctgctgttataatgctccctattattggggttgcgtagcagaattaggaaaatcaagatccatgacagg |
42798532 |
T |
|
| Q |
101 |
cagggaagtgtagagcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgtgatggctaactttgggataatcacagtaa |
200 |
Q |
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| T |
42798533 |
cagggaagtgtagagcaagagggttcagacgtatatatggagctaatagactttgaatgtaatccagttgcgatggctaactttgggataatcacagtaa |
42798632 |
T |
|
| Q |
201 |
ctggatctgttgcttttcaaaatgttcaacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttgcaaagagta |
300 |
Q |
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| T |
42798633 |
ctggatctgttgcttttcaaaatgtttaacatgggccgttgagtggagcttgaggcagaattgtggggagttttagaagggttgcgacttgcaaagagta |
42798732 |
T |
|
| Q |
301 |
caggttttaaagcagtggagttatgtgtggattgtgagagagactgttgttaattatgttacgcagagtaatgtatgaacattgttggaaaggagtctta |
400 |
Q |
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| T |
42798733 |
caggttttaaagcagtggagttatgtgtggattgtgagagagactgttgttaattatgttacgcagagtaatgtatgaacattgttggaaaggagtctta |
42798832 |
T |
|
| Q |
401 |
tcgagtgtattcaaagacttgtagaaatggactgggaggtgaagatatgccactcatatcatgaagcaaagaatataatgatgctttgactgtttatgag |
500 |
Q |
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| T |
42798833 |
tcgagtgtattcaaagacttgtagaaatggactgggaggtgaagatatgccactcgtatcatgaagcaaagaatataatgatgctttgattgtt--tgag |
42798930 |
T |
|
| Q |
501 |
ttgtgtctgactcagttggtccagttgctcaattctgatagtagacgagtttctactcctctattagtttcggtgcaatttctctttttgtttggactta |
600 |
Q |
| |
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| T |
42798931 |
ttgtgtctgactcagttggtccagttgctcaattctgatagtagacgagtttcttctcctctattagtttcggtgcaatttctctttttgtttggactta |
42799030 |
T |
|
| Q |
601 |
gaccctttctgtattgaaaaaattgtgcactgtacaaacattttagcacaatcattggtcatgcacttcgcaaatatgaaagcaaacataattctaatga |
700 |
Q |
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| T |
42799031 |
gaccctttctgtattgaaaaaattgtgcactgtacaaacattttagcacaatcattggtcatgcacttcgcaaatatgaaagcaaacataattctaatga |
42799130 |
T |
|
| Q |
701 |
atcacaactattttaagcagctaatataattatgtgtgatcatgtttatgattttattttgatgaaccaattcatatcatttaatgtatggccaatattt |
800 |
Q |
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| T |
42799131 |
atcacaactattttaagcagctaatataattatgtgtgatcatgtttatgattttattttgatgaaccaattcatatcatttaatgtatggccaatattt |
42799230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 479 - 732
Target Start/End: Original strand, 28762528 - 28762780
Alignment:
| Q |
479 |
tgatgctttgactgtttatgagttgtgtctgactcagttggtccagttgctcaattctgatagtagacgagtttctactcctctattagtttcggtgcaa |
578 |
Q |
| |
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||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||| | | |||||| ||||||||||||||| |||| || || |
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| T |
28762528 |
tgatgctttgactgttt--gagttgtgtccgactcaattggtccagtttctcaattctgatattcgtcgagttcctactcctctattagattcgatgtaa |
28762625 |
T |
|
| Q |
579 |
tttctctttttgtttggacttagaccct-ttctgtattgaaaaaattgtgcactgtacaaacattttagcacaatcattggtcatgcacttcgcaaatat |
677 |
Q |
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| T |
28762626 |
tttctctttttgtttggacttagaccctcttttgtacccaaaacaccatgaactgtacaaacattttagcacaatcattggtcattcacttcataaggat |
28762725 |
T |
|
| Q |
678 |
gaaagcaaacataattctaatgaatcacaactattttaagcagctaatataatta |
732 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
28762726 |
gaaaacaaacataattctaatgaatcacaactatcttaagcagctcatctaatta |
28762780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 717
Target Start/End: Complemental strand, 19376569 - 19376488
Alignment:
| Q |
636 |
aaacattttagcacaatcattggtcatgcacttcgcaaat--atgaaagcaaacataattctaatgaatcacaactattttaag |
717 |
Q |
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| T |
19376569 |
aaacattatagcacaatcattggtcatgca--tcgcacattgatgaaaccaaacataattccaataaagcacaacaatgttaag |
19376488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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