View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3109_high_2 (Length: 563)
Name: NF3109_high_2
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3109_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 15 - 552
Target Start/End: Original strand, 16887442 - 16887978
Alignment:
| Q |
15 |
caattatcacttctcaaaagttaggtcactcgtcacattgagattcaacacaagatccacgcatctaatagcaaaataatagagccaggattcccaactt |
114 |
Q |
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| T |
16887442 |
caattatcacttctcaaaagttaggtcactcgtcacattgagattcgacacaagatccacgcatctaatagcaaaata-tagagccaggattcccaactt |
16887540 |
T |
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| Q |
115 |
tcagcagcagaatcctgcattcaggcaattggacaatgtcggccgaaaggtgatgttgatgaaaggaaaagagattgcagtttcattttaattgacaata |
214 |
Q |
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| T |
16887541 |
tcagcagcagaatcctgcattcaggcaattggacaatgtcggccgaaaggtgatgttgatgaaaggaaaagagattgcagtttcattttaattgacaata |
16887640 |
T |
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| Q |
215 |
atggtcatacaacattaagtcagtgtatgcatgtgagagtatgagcgaatatgcaagagacaaacccgatgtagttgaagagtcttcgtttttgaactgt |
314 |
Q |
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| T |
16887641 |
atggtcatacaacatcaagtcagtgtatgcatgtgagagtatgagcgaatatgcaagagacaaacccgatgtagttgaagagtcttcgtttttgaactgt |
16887740 |
T |
|
| Q |
315 |
ccaacgcaactccacttgctgcacacctccaatgcacagagcaggttaaggtagagtgaattcttgcaaccgtttacttgtacaatgtgtcaccgacaca |
414 |
Q |
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| T |
16887741 |
ccaacgcaactccacttgctgcacacctccaatgcacagagcaggttaaggtagagtgaattcttgcaaccgtttacttgtacaatgtgtcaccgacaca |
16887840 |
T |
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| Q |
415 |
tatcaagtttcatgcacatgaatacattactatcttctaaaacatccggttttgaaatgttaaaaattaagaatccatgatttctatactcaaaagtcaa |
514 |
Q |
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| T |
16887841 |
tatcaagtttcatgcacatgaatacattactatcttctaaaacctccggttttgaaatgttaaaaattaagaatccatgatttctatactcaaaagtcaa |
16887940 |
T |
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| Q |
515 |
aaggtatcattaggttgccccatctcgcaggtgttcat |
552 |
Q |
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| T |
16887941 |
aaggtatcattaggttgccccatctcacaagtgttcat |
16887978 |
T |
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