View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3109_high_3 (Length: 524)
Name: NF3109_high_3
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3109_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 51341461 - 51341971
Alignment:
| Q |
1 |
gtggtttggtcttatctctatcagttgaagaccaaattatggcatgttttgtcacaagggtaaggacacccaatagcttggacaccaactcggtcaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51341461 |
gtggtttggtcttatctctatcagttgaaaaccaaattatggcatgttttgtcacaagggtaaggacacccaatagcttggacaccaactcggtcaaaaa |
51341560 |
T |
|
| Q |
101 |
accagttcccaacagaatctgcgatcccctgcttgtattttatgacagacacccattactattagaagggtcttgtataatataatctaatttgatcaaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51341561 |
accagttcccgacagaatctgcgatcccctgcttgtattttatgacagacactcattactattagaagggtcttgtataatataatctaatttgatcaaa |
51341660 |
T |
|
| Q |
201 |
attactataactataagcaatagttagaatagaatacgatagacttactttatttccaatatgaggagaaccgcgtgcatgccatgtatcctgtctttca |
300 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51341661 |
attactataactatatggaatagttagaatagaatacgatagacttactttatttccaatatgaggagaaccgcgtgcatgccatgtatcctgtctttca |
51341760 |
T |
|
| Q |
301 |
gattggcagtgagcaaaacacgaattaatgaataacccgttttggcgggaccttgagaagcgtcttgtaactctaagcatctgatttcgaaaacctattt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51341761 |
gattggcagtgagcaaaacacgaattaatgaataacccgttttggcgggaccttgagaagcgtcttgtaactctaagcatctgatttcgaaaacctattt |
51341860 |
T |
|
| Q |
401 |
cattttcattcaagaacaactgatatcatgaatatgctactcaaaccactagaaacagctactctttgaaagttctgattaattaattaccttgtagata |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51341861 |
cattttcattcaagaacaactgatatcatgaatatgctactcaaaccactagaaacagctactctttgaaagttctgattaattaattaccttgtagata |
51341960 |
T |
|
| Q |
501 |
ttgtatctgtg |
511 |
Q |
| |
|
||||||||||| |
|
|
| T |
51341961 |
ttgtatctgtg |
51341971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 335
Target Start/End: Original strand, 45474679 - 45474732
Alignment:
| Q |
282 |
ccatgtatcctgtctttcagattggcagtgagcaaaacacgaattaatgaataa |
335 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
45474679 |
ccatgtatcttgtctctccgattggcaatgagcaaaacaagaatttatgaataa |
45474732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University