View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3109_low_11 (Length: 249)
Name: NF3109_low_11
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3109_low_11 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 31 - 249
Target Start/End: Original strand, 43257187 - 43257402
Alignment:
| Q |
31 |
ggcgttagttcagtggttagagttgactttgtaacctcaagagacataaaattaaacgaatcggttgtaatatggtcatctgagacactattattaataa |
130 |
Q |
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| T |
43257187 |
ggcgttagttcagtggttagagttgactttgtaacctcaagagacatagaaa-----gaatcggttgtaatatggtcatctgagacactattattaataa |
43257281 |
T |
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| Q |
131 |
aaagcaaacata--attaagaaaaatttgagtgagagataaaccttgacaggagcagctgccttgacaacaaaggatccttttctagaagacccaactga |
228 |
Q |
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| T |
43257282 |
aaagcaaacatataattaagaaaaatttgagtgagagataaaccttgacaggagcagctgccttgacaacaaaggatccttttctagaagacccaattga |
43257381 |
T |
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| Q |
229 |
agatgggagtgatcttgctcc |
249 |
Q |
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| T |
43257382 |
agatgggagtgatcttgctcc |
43257402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 94 - 249
Target Start/End: Original strand, 43260834 - 43260998
Alignment:
| Q |
94 |
gttgtaatatggtcatctgagacactattattaat-aaaaagcaaacataa--ttaagaaaaatttgagtgagagataaaccttgacaggagcag----- |
185 |
Q |
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| T |
43260834 |
gttgtaatatgatcatcagagacactattattaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaa |
43260933 |
T |
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| Q |
186 |
-ctgccttgacaacaaaggatccttttctagaagacccaactgaagatgggagtgatcttgctcc |
249 |
Q |
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| T |
43260934 |
gctgccttgacaacaaaggaaccttttctagaagaccctattgaagatgggagtgatcttgctcc |
43260998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 43260792 - 43260831
Alignment:
| Q |
37 |
agttcagtggttagagttgactttgtaacctcaagagaca |
76 |
Q |
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| T |
43260792 |
agttcagtggttagagttgactttgtaacttcaagagaca |
43260831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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