View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3109_low_12 (Length: 232)
Name: NF3109_low_12
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3109_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 43260863 - 43261075
Alignment:
| Q |
1 |
attaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttttct |
100 |
Q |
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| T |
43260863 |
attaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttttct |
43260962 |
T |
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| Q |
101 |
agaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgtgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43260963 |
agaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgtgta |
43261062 |
T |
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| Q |
201 |
gccatgtttttcc |
213 |
Q |
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||||||||||||| |
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| T |
43261063 |
gccatgtttttcc |
43261075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 43257280 - 43257479
Alignment:
| Q |
8 |
aaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttttctagaagac |
107 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
43257280 |
aaaaagcaaacatataattaagaaaaatttgagtgagagataaaccttgacaggagcag------ctgccttgacaacaaaggatccttttctagaagac |
43257373 |
T |
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| Q |
108 |
cctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgtgtagccatgt |
207 |
Q |
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|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |
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| T |
43257374 |
ccaattgaagatgggagtgatcttgctccaaaactctgtcttacagcttcagctgcaaaagtaagagatgacgacgacaatagaacttgtgtagccatgt |
43257473 |
T |
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