View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3109_low_5 (Length: 322)
Name: NF3109_low_5
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3109_low_5 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 49735305 - 49735626
Alignment:
| Q |
1 |
taacaattgacataagtaaaaaacttaaatttggacaattctgaactttgtcctctatatgtgacatggcatccaagtttggacaataacttacttgaaa |
100 |
Q |
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| T |
49735305 |
taacaattgacataagtaaaaaacttaaatttggacaattctgaactttgtcctctatatgtgacatagcatccaagtttggacaataacttacttgaaa |
49735404 |
T |
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| Q |
101 |
aacatctgatattgaggttttgccattcttaacaagttgtgctccagcataaaaactgcatgcataaacacagaacataaagaagattgataagccaaaa |
200 |
Q |
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| T |
49735405 |
aacatctgatattgaggttttgccattcttaacaagttgtgctccagcataaaaactgcatgcataaacacagaacataaagaagattgataagccaaaa |
49735504 |
T |
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| Q |
201 |
ccaactccactaactataccctgcctttttcctgtctgtactggtactacacatttcttttggtataactccatcaccttctcttcagcacagaaagcgg |
300 |
Q |
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| T |
49735505 |
ccaactccactaactataccctgcctttttcctgtctgtactggtactacacatttcttttggtataactccatcaccttctcttcagcacagaaagcgg |
49735604 |
T |
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| Q |
301 |
aaactgttctgatattccctac |
322 |
Q |
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| T |
49735605 |
aaactgttctgatattccctac |
49735626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 310
Target Start/End: Complemental strand, 36287966 - 36287788
Alignment:
| Q |
132 |
acaagttgtgctccagcataaaaactgcatgcataaacacagaacataaagaagattgataagccaaaaccaactccactaactataccctgcctttttc |
231 |
Q |
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| T |
36287966 |
acaagttttgctccagcatagaaactgcatgcatagaccaaaaacagtaacaagaatgacatcccgaaaccaactccacttattatcccttgctttatgc |
36287867 |
T |
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| Q |
232 |
ctgtctgtactggtactacacatttcttttggtataactccatcaccttctcttcagcacagaaagcggaaactgttct |
310 |
Q |
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| T |
36287866 |
ctgccttaattggtgcttcacattttttttggtacaagtccataaccttctcttcagcacagaaagaagcaactgttct |
36287788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 55 - 322
Target Start/End: Complemental strand, 51214750 - 51214483
Alignment:
| Q |
55 |
ctatatgtgacatggcatccaagtttggacaataacttacttgaaaaacatctgatattgaggttttgccattcttaacaagttgtgctccagcataaaa |
154 |
Q |
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| T |
51214750 |
ctatatctgaaatggcctccgagttgggaccgtaacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaa |
51214651 |
T |
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| Q |
155 |
actgcatgcataaacacagaacataaagaagattgataagccaaaaccaactccactaactataccctgcctttttcctgtctgtactggtactacacat |
254 |
Q |
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| T |
51214650 |
actgattgcatagacacaaaacagaaagaagattgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctggaatggtactacacat |
51214551 |
T |
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| Q |
255 |
ttcttttggtataactccatcaccttctcttcagcacagaaagcggaaactgttctgatattccctac |
322 |
Q |
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| T |
51214550 |
ttcttctggtataattccatcactttctcttcggcacagaaagcagaaactgttctgatattccctac |
51214483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 29935477 - 29935523
Alignment:
| Q |
264 |
tataactccatcaccttctcttcagcacagaaagcggaaactgttct |
310 |
Q |
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| T |
29935477 |
tataattccatcaccttctcttcagcacagaaagaagaaactgttct |
29935523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 51147532 - 51147474
Alignment:
| Q |
264 |
tataactccatcaccttctcttcagcacagaaagcggaaactgttctgatattccctac |
322 |
Q |
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| T |
51147532 |
tataattccatcaccttctcctcagcacaaaaagaggaaacagttcttatactccctac |
51147474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 51201481 - 51201423
Alignment:
| Q |
264 |
tataactccatcaccttctcttcagcacagaaagcggaaactgttctgatattccctac |
322 |
Q |
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| T |
51201481 |
tataattccatcaccttctcttcagaacagaaagaagcaactgttcttatactccctac |
51201423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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