View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3109_low_6 (Length: 315)
Name: NF3109_low_6
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3109_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 51214823 - 51214528
Alignment:
| Q |
18 |
aaaaatacctgaaaagaaattaaatgtttaatgctaaaagaatgtgatgagctcagagttcaaccaaagagcactatatctgaaatggcctccgagttgg |
117 |
Q |
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| T |
51214823 |
aaaaatacctgaaaagaaattaaatgtttaatgctaaaagaatgtgatgagctcagagttcaaccaaagagcactatatctgaaatggcctccgagttgg |
51214724 |
T |
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| Q |
118 |
gaccgtaacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaa |
217 |
Q |
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| T |
51214723 |
gaccgtaacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaa |
51214624 |
T |
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| Q |
218 |
gaagattgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctggaatggtactacacatttcttctggtataattccatcac |
313 |
Q |
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| T |
51214623 |
gaagattgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctggaatggtactacacatttcttctggtataattccatcac |
51214528 |
T |
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Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 123 - 315
Target Start/End: Original strand, 49735391 - 49735583
Alignment:
| Q |
123 |
taacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaaga |
222 |
Q |
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||||||||||||||||| |||| || || ||||||||||||| || |||||| || ||||||||||||||| |||||| ||||| |||| |||||||| |
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| T |
49735391 |
taacttacttgaaaaacatctgatattgaggttttgccattcttaacaagttgtgctccagcataaaaactgcatgcataaacacagaacataaagaaga |
49735490 |
T |
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| Q |
223 |
ttgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctggaatggtactacacatttcttctggtataattccatcacct |
315 |
Q |
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||| ||| ||||||||| |||||| |||| ||||||||||||||||||||| | |||||||||||||||||| |||||||| |||||||||| |
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| T |
49735491 |
ttgataagccaaaaccaactccactaactataccctgcctttttcctgtctgtactggtactacacatttcttttggtataactccatcacct |
49735583 |
T |
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