View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3109_low_8 (Length: 311)
Name: NF3109_low_8
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3109_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 19507092 - 19507325
Alignment:
| Q |
1 |
actacatgattaaactcaaattaaacttactaattaatttgtgttttaacagggattagagctagtgaatgcagcattttgtcgctattttcaaagtaca |
100 |
Q |
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| T |
19507092 |
actacatgattaaactcaaattaaacttactaattaatttgtgttttaacagggattagagctagtgaatgcagcattttgtcgctattttcaaagtaca |
19507191 |
T |
|
| Q |
101 |
tgttttgatatcagcaggaaggtccatactgtgatgcgtttggttgaactttacaggccctatgtgttcttcaatggcgtgtaagttaaacaagataaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19507192 |
tgttttgatatcagcaggaaggtccatactgtgatgcgtttggttgaactttacaggccctatgttttcttcaatggcgtgtaagttaaacaagataaaa |
19507291 |
T |
|
| Q |
201 |
tttagtgataagaaaattagagatgaattttaca |
234 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
19507292 |
tttagtgacaagaaaattagagatgaattttaca |
19507325 |
T |
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