View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3109_low_9 (Length: 266)

Name: NF3109_low_9
Description: NF3109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3109_low_9
NF3109_low_9
[»] chr4 (5 HSPs)
chr4 (8-266)||(51214284-51214542)
chr4 (164-265)||(29935477-29935578)
chr4 (177-265)||(51201393-51201481)
chr4 (164-265)||(51147431-51147532)
chr4 (180-266)||(51158602-51158688)
[»] chr3 (2 HSPs)
chr3 (74-266)||(49735567-49735760)
chr3 (177-259)||(36287746-36287828)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 266
Target Start/End: Original strand, 51214284 - 51214542
Alignment:
Q  8 cagcacagacgcaaaggtttgtgccttacacaatgtgcttcaattgtgtcacaatgcatttttgtctctaaatttatttagtacatattttgtttctata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51214284 cagcacagacgcaaaggtttgtgccttacacaatgtgcttcaattgcgtcacaatgcatttttgtctctaaatttatttagtacatattttgtttctata 51214383  T
Q  108 tgaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaactatacgaggaagcaagtcaagtagcaaacgatgcag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  51214384 tgaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaactatacgaggaagcaagtcaagtagcgaacgacgcag 51214483  T
Q  208 tagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattatac 266  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51214484 tagggaatatcagaacagtttctgctttctgtgccgaagagaaagtgatggaattatac 51214542  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 29935578 - 29935477
Alignment:
Q  164 acagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaatta 263  Q
    ||||||| | |||||||||||||||||||| ||||| ||||| ||||||  ||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  29935578 acagaaattgtacgaggaagcaagtcaagtggcaaatgatgcggtagggtgtataagaacagtttcttctttctgtgctgaagagaaggtgatggaatta 29935479  T
Q  264 ta 265  Q
    ||    
T  29935478 ta 29935477  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 51201393 - 51201481
Alignment:
Q  177 gaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattata 265  Q
    ||||||||||||||||| || || ||||||||||||| ||| ||||||||| || |||||||| | |||||||||||||||||||||||    
T  51201393 gaggaagcaagtcaagtggcgaatgatgcagtagggagtataagaacagttgcttctttctgttctgaagagaaggtgatggaattata 51201481  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 51147431 - 51147532
Alignment:
Q  164 acagaaactatacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaatta 263  Q
    ||||||| | |||||||||||||||||||| ||||| ||||| ||||||| ||| ||||| |||||  |||| ||||| || ||||||||||||||||||    
T  51147431 acagaaattgtacgaggaagcaagtcaagtggcaaatgatgctgtagggagtataagaactgtttcctctttttgtgctgaggagaaggtgatggaatta 51147530  T
Q  264 ta 265  Q
    ||    
T  51147531 ta 51147532  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 51158602 - 51158688
Alignment:
Q  180 gaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattatac 266  Q
    |||||||||||||| ||||| ||||| |||||||  || ||||||||| || |||| ||||| ||| ||||||| ||||||||||||    
T  51158602 gaagcaagtcaagtggcaaatgatgctgtagggagcataagaacagttgcttctttttgtgctgaaaagaaggtaatggaattatac 51158688  T

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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 266
Target Start/End: Complemental strand, 49735760 - 49735567
Alignment:
Q  74 tctaaatttatttagtacatattttg-tttctatatgaaatttgtactaatcttcatttgacatgatgtttctatgctctaaatatgtttcacagaaact 172  Q
    |||||||||||||||||||||||||| ||| |||||  |||| |||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||     
T  49735760 tctaaatttatttagtacatattttgctttatatatttaattagtactaatctccatttgacatgatgttactatgctctatatatgtttgacagaaaca 49735661  T
Q  173 atacgaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatggaattatac 266  Q
     || |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  49735660 gtatgaggaagcaagtcaagtagcgaatgatgcagtagggaatatcagaacagtttccgctttctgtgctgaagagaaggtgatggagttatac 49735567  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 36287746 - 36287828
Alignment:
Q  177 gaggaagcaagtcaagtagcaaacgatgcagtagggaatatcagaacagtttctgctttctgtgccgaagagaaggtgatgga 259  Q
    ||||||||||||||||| ||||| ||||| ||  | || || ||||||||| || |||||||||| ||||||||||| |||||    
T  36287746 gaggaagcaagtcaagtggcaaatgatgctgtgagtaacattagaacagttgcttctttctgtgctgaagagaaggttatgga 36287828  T

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