View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3110_high_1 (Length: 575)

Name: NF3110_high_1
Description: NF3110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3110_high_1
NF3110_high_1
[»] chr4 (25 HSPs)
chr4 (16-560)||(6614052-6614596)
chr4 (161-548)||(23158313-23158700)
chr4 (161-524)||(36279366-36279729)
chr4 (161-553)||(15649230-15649622)
chr4 (161-472)||(18116545-18116857)
chr4 (161-548)||(51872357-51872744)
chr4 (162-550)||(17838698-17839086)
chr4 (161-468)||(22340331-22340638)
chr4 (161-549)||(8110589-8110977)
chr4 (160-508)||(15705722-15706070)
chr4 (161-468)||(29123602-29123908)
chr4 (161-508)||(4303365-4303712)
chr4 (412-550)||(4723310-4723448)
chr4 (161-514)||(12915497-12915850)
chr4 (161-524)||(29192478-29192841)
chr4 (161-485)||(50693917-50694241)
chr4 (161-302)||(3621420-3621561)
chr4 (325-516)||(12290496-12290687)
chr4 (258-485)||(34994461-34994688)
chr4 (366-551)||(3621238-3621423)
chr4 (161-485)||(36950936-36951260)
chr4 (161-485)||(17469287-17469611)
chr4 (24-151)||(28858177-28858304)
chr4 (267-473)||(24059390-24059596)
chr4 (334-515)||(25134983-25135164)
[»] chr2 (13 HSPs)
chr2 (161-553)||(27914764-27915156)
chr2 (165-560)||(23384516-23384898)
chr2 (161-554)||(21963074-21963467)
chr2 (161-544)||(32349550-32349933)
chr2 (161-407)||(30275703-30275948)
chr2 (161-468)||(38938224-38938531)
chr2 (417-548)||(30274400-30274532)
chr2 (259-545)||(33937038-33937322)
chr2 (244-545)||(22298587-22298888)
chr2 (259-545)||(1258135-1258422)
chr2 (267-373)||(20007345-20007451)
chr2 (119-163)||(27069901-27069945)
chr2 (120-163)||(20468716-20468759)
[»] chr7 (23 HSPs)
chr7 (161-554)||(9403288-9403681)
chr7 (162-553)||(37075754-37076145)
chr7 (161-553)||(34981514-34981906)
chr7 (161-548)||(12121258-12121645)
chr7 (161-546)||(24819371-24819756)
chr7 (161-545)||(36575545-36575929)
chr7 (161-549)||(40891927-40892315)
chr7 (161-466)||(586538-586843)
chr7 (370-560)||(3483065-3483256)
chr7 (161-548)||(20705655-20706042)
chr7 (161-548)||(20873699-20874086)
chr7 (322-549)||(21607909-21608136)
chr7 (325-546)||(31252892-31253113)
chr7 (202-509)||(27278313-27278620)
chr7 (161-545)||(27868585-27868959)
chr7 (259-473)||(18815654-18815868)
chr7 (259-359)||(27990212-27990312)
chr7 (258-490)||(45649421-45649653)
chr7 (258-485)||(47553024-47553251)
chr7 (281-373)||(8457467-8457559)
chr7 (24-160)||(8864799-8864935)
chr7 (161-478)||(22865911-22866228)
chr7 (334-473)||(5196380-5196519)
[»] chr5 (12 HSPs)
chr5 (161-553)||(10462300-10462692)
chr5 (161-554)||(5825132-5825525)
chr5 (161-553)||(6678739-6679131)
chr5 (161-468)||(27891450-27891757)
chr5 (161-463)||(11265782-11266084)
chr5 (161-539)||(31962835-31963213)
chr5 (288-490)||(38931499-38931701)
chr5 (161-468)||(29150057-29150364)
chr5 (474-550)||(3998524-3998600)
chr5 (288-478)||(8895126-8895316)
chr5 (119-163)||(42762819-42762863)
chr5 (414-485)||(29322528-29322599)
[»] chr3 (21 HSPs)
chr3 (165-550)||(17153974-17154360)
chr3 (162-553)||(53152249-53152640)
chr3 (161-549)||(23571784-23572172)
chr3 (161-520)||(3514384-3514743)
chr3 (161-545)||(9818733-9819119)
chr3 (325-554)||(32945557-32945786)
chr3 (161-549)||(48547225-48547613)
chr3 (160-550)||(42462390-42462780)
chr3 (161-547)||(23602936-23603322)
chr3 (161-514)||(8594963-8595316)
chr3 (425-550)||(44879665-44879790)
chr3 (348-546)||(9246703-9246901)
chr3 (259-461)||(30737247-30737449)
chr3 (344-472)||(8542253-8542381)
chr3 (180-514)||(42459474-42459807)
chr3 (161-502)||(10753781-10754122)
chr3 (161-545)||(39632995-39633379)
chr3 (161-485)||(16663711-16664035)
chr3 (258-485)||(52196022-52196249)
chr3 (426-503)||(52962633-52962710)
chr3 (333-373)||(28393365-28393405)
[»] chr8 (7 HSPs)
chr8 (161-553)||(2959753-2960145)
chr8 (161-550)||(26077889-26078278)
chr8 (213-549)||(31423430-31423766)
chr8 (161-508)||(26390405-26390751)
chr8 (275-524)||(29529870-29530118)
chr8 (258-485)||(10801940-10802168)
chr8 (160-207)||(29532370-29532417)
[»] chr6 (11 HSPs)
chr6 (161-548)||(18295559-18295946)
chr6 (165-550)||(2893907-2894292)
chr6 (161-551)||(28605050-28605440)
chr6 (261-468)||(667016-667222)
chr6 (258-485)||(5391777-5392004)
chr6 (334-473)||(17227675-17227814)
chr6 (334-468)||(7218686-7218820)
chr6 (274-472)||(9759779-9759977)
chr6 (334-485)||(14223505-14223656)
chr6 (161-211)||(667284-667334)
chr6 (161-220)||(7218513-7218572)
[»] chr1 (13 HSPs)
chr1 (161-472)||(41342971-41343282)
chr1 (161-548)||(10003603-10003990)
chr1 (161-524)||(27029648-27030011)
chr1 (161-549)||(5556938-5557326)
chr1 (161-508)||(49369479-49369826)
chr1 (325-550)||(44753748-44753973)
chr1 (357-548)||(48759777-48759968)
chr1 (334-545)||(37666028-37666239)
chr1 (259-468)||(45757435-45757644)
chr1 (267-472)||(40392461-40392658)
chr1 (181-358)||(26995826-26996002)
chr1 (435-548)||(32152387-32152500)
chr1 (420-473)||(26995712-26995765)
[»] scaffold0041 (1 HSPs)
scaffold0041 (161-549)||(73969-74357)
[»] scaffold0032 (1 HSPs)
scaffold0032 (161-550)||(58559-58948)
[»] scaffold0003 (2 HSPs)
scaffold0003 (334-468)||(225060-225194)
scaffold0003 (161-220)||(224889-224948)
[»] scaffold0289 (1 HSPs)
scaffold0289 (259-357)||(10928-11026)


Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 560
Target Start/End: Original strand, 6614052 - 6614596
Alignment:
Q  16 atatttacaaagaatgttgtgcttggcttgatacagggcagttcccacctgatctcaatatgaaaaatattgcaattatacccaaaggcaattccctaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6614052 atatttacaaagaatgttgtgcttggcttgatacagggcagttcccacctgatctcaatatgaaaaatattgcaattatacccaaaggcaattccctata 6614151  T
Q  116 cagtatgaaggattggcgtccaatagctctctgtaatgtactttataaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggtta 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614152 cagtatgaaggattgtcgtccaatagctctctgtaatgtactttataaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggtta 6614251  T
Q  216 tggcttatgctatcggattggttaggtcttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaaga 315  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614252 tggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaaga 6614351  T
Q  316 attctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttgga 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6614352 attctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttgga 6614451  T
Q  416 agttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacccttta 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6614452 agttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtttgttttttattattcttattggagacaaaacccttta 6614551  T
Q  516 ccttgtttaaatactattttgtaaagtctgttttttgggcctttg 560  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  6614552 ccttgtttaaatactattttgtaaagtcttttttttgggcctttg 6614596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 161 - 548
Target Start/End: Original strand, 23158313 - 23158700
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  23158313 taaggaggaggaaagggatcatttgtttttccaatatgattattatggtcgattatggcttatgctatcggattggttaggttttgttacggttctcaat 23158412  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||    
T  23158413 ggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatata 23158512  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |||||| | ||||||||||||||||||||    
T  23158513 ctatatgaaaagatcgcaacaggaggattttccaaaaccaaattgttcttttggaagttctacttgaaagagtcaaatttcaaacgttttggtggttgaa 23158612  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 548  Q
    |||||||| ||| |||||||||||||||||||||||||||||| |||| | ||||||||||||| | ||| |||||||||||||||||    
T  23158613 agctaactgcatcttgttcgttttttattattcttattggagaaaaaatcatttaccttgtttacagactgttttgtaaagtctgttt 23158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 161 - 524
Target Start/End: Original strand, 36279366 - 36279729
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  36279366 taaggaggagaaaagggatcatttgtttttccaatgtgcttattatggtcgattatggcttatgctatcggattggttaggttttgttacggttttcaat 36279465  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| ||||||||||| ||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||| ||    
T  36279466 ggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatata 36279565  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  36279566 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcttttggaagttctacttgaaagagtcaaacttcaaacgttttggtggttgaa 36279665  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 524  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  36279666 agctaactacatcttgttcgttttttattattcttattggagaaaaaatcttttaccttgttta 36279729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 161 - 553
Target Start/End: Original strand, 15649230 - 15649622
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||  ||||||    
T  15649230 taaggaggaggaaagagaccatttattttttcaatgtgattattatggtcggttatggcttatgctatcagattggttaggttttgtcacggcgctcaat 15649329  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || || |||||||||||||| |||||||||||||| |||||||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||     
T  15649330 ggaaacttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctatgcaaactttttctattatttggatttcggtcttatttt 15649429  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15649430 ctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaa 15649529  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 553  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||| ||| |||||||| | |||||| |||||||||||||||||||    
T  15649530 agctaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttacagactattgtgtaaagtctgttttttgg 15649622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 161 - 472
Target Start/End: Original strand, 18116545 - 18116857
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||| | |||    
T  18116545 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttttgctatcggattggcttggttttgttacggtttttaat 18116644  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| || |||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  18116645 ggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtcttattta 18116744  T
Q  361 ctatatggaaagatcgcaacaggaggatttttc-aaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 459  Q
    ||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  18116745 ctatatggaaagatcgcaataggaggattttccaaaaaccaaattgttcatttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttga 18116844  T
Q  460 aagctaactacat 472  Q
    |||||||||||||    
T  18116845 aagctaactacat 18116857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 161 - 548
Target Start/End: Complemental strand, 51872744 - 51872357
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||| |||    
T  51872744 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggcttatgctatcggattggttaggtttggttacagttcttaat 51872645  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    ||||||| |||| | ||||| ||||||||||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||| ||||| ||    
T  51872644 ggcaattcatatactcatgctaatcagttttgtggtctaggaggtttctcaaagaattctatgaaagcttttactattatttggatatcggccttatata 51872545  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  51872544 ctatttggaaaaatcgcaacaggaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaa 51872445  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 548  Q
    |||||||||||| |||||||||||| |||| |||||||||| | | || |||||||||| |||| | | | | |||||||||||||||    
T  51872444 agctaactacatcttgttcgtttttgattactcttattggaaaaataatcctttaccttatttacagattgtgttgtaaagtctgttt 51872357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 162 - 550
Target Start/End: Original strand, 17838698 - 17839086
Alignment:
Q  162 aaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatg 261  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||  || ||||| ||||  | ||| ||||||||||  |  |||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattgacttggttttgttacggtgtttcatg 17838797  T
Q  262 gcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttac 361  Q
    ||||||||||| ||||||| |||||||||||||||||||| || || |||||||||||  ||||||| || |||||||||||||||| ||| ||||||      
T  17838798 gcaatttatatacacatgctaatcagttttgtgctcttgggggcttttcaaagaattccatgaaagctttgtctattatttggattttggttttatttgt 17838897  T
Q  362 tatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaa 461  Q
    ||| |||||||||||||||| || |||||| |||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| |||||    
T  17838898 tatttggaaagatcgcaacatgaagattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggatgaaa 17838997  T
Q  462 gctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 550  Q
    || |||| |||  |||||  |||| ||||| | | |||||||||||| || |||  ||||||| | |||   |||||| ||||||||||    
T  17838998 gcaaacttcatcatgttcacttttgattatcccttttggagacaaaatcccttatgttgtttacagactgccttgtaatgtctgttttt 17839086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 161 - 468
Target Start/End: Complemental strand, 22340638 - 22340331
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||  || | ||| ||||||| ||| ||||||||||  |  ||    
T  22340638 taaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttggtttcgaattggtttggttttgttacggtgtttcat 22340539  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||| ||| ||||||     
T  22340538 ggcaatttatatcctcatgctaatcagttttgtgctcttggaggtttttcaaagaattctatgaaagctttgtctattatttggattttggttttatttg 22340439  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||||||||||||||||||   || |||||| |||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||    
T  22340438 ttatatggaaagatcgcaatttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatgaa 22340339  T
Q  461 agctaact 468  Q
    ||| ||||    
T  22340338 agcaaact 22340331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 161 - 549
Target Start/End: Complemental strand, 8110977 - 8110589
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||| ||||| ||||| ||||||||| |||||||||| ||||||||  || ||||| ||||||| ||| |||||| |||  |  ||    
T  8110977 taaggaggaggaaagggaccatttcttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttaaggtgtttcat 8110878  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||| |||||||||||||||  || ||| ||| ||||||| ||||||||||||||||||     
T  8110877 ggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaaagaattctaggacagcttttactattatatggatttcggtcttatttg 8110778  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| ||||| || |||||||||||||||||||| |||||| |||  ||| | |||| |||| |||||||||| ||||| || || | ||||||| ||||    
T  8110777 ttatttggaaggaccgcaacaggaggatttttcagaaccaagttgaacatctcgaagctctttttgaaagggttaaacttcagacttattggtggctgaa 8110678  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 549  Q
    |||  ||| |||    |||| |||| ||||| | | |||||||||||| ||||||| ||||||| | ||| || ||||| |||||||||    
T  8110677 agcagacttcatcactttcgcttttgattatcccttttggagacaaaatcctttacattgtttacagactgttgtgtaatgtctgtttt 8110589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 160 - 508
Target Start/End: Original strand, 15705722 - 15706070
Alignment:
Q  160 ataaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaa 259  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  || ||||| ||||  | ||| |||||||||| ||  |    
T  15705722 ataaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattgacttggttttgttacggtgcttca 15705821  T
Q  260 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 359  Q
    ||||||||||||| | ||||| || || |||||||| ||||||| ||| ||||||| ||||  |||||| || |||||| ||||||||||||| ||||||    
T  15705822 tggcaatttatatacccatgctaaccaattttgtgcccttggagatttttcaaagagttctacgaaagctttatctattgtttggatttcggttttattt 15705921  T
Q  360 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 459  Q
    | ||| |||||||||||||| | || |||||| |||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| |||    
T  15705922 attatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatga 15706021  T
Q  460 aagctaactacattttgttcgttttttattattcttattggagacaaaa 508  Q
    ||||  ||| ||||  ||||  |||| ||||| | | ||||||||||||    
T  15706022 aagcacacttcattacgttcaattttgattatcccttttggagacaaaa 15706070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 161 - 468
Target Start/End: Original strand, 29123602 - 29123908
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggt-tctcaa 259  Q
    ||||||||||||||| || ||||||||||| |||||||||| ||||||||| ||||||||  || | ||| ||||| | ||| |||||||||| | ||||    
T  29123602 taaggaggaggaaagagaccatttgttttttcaatgtgatttttatggtcgattatggctcttggtttcgaattggcttggttttgttacggtgtttcaa 29123701  T
Q  260 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 359  Q
     |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||| ||||||    
T  29123702 -ggcaatttatatcctcatgctaatcagttttgtgctcttggaggttt-tcaaagaattctatgaaagctttgtctattatttggatttcggttttattt 29123799  T
Q  360 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 459  Q
      ||| ||||||||||||||   ||||||||| |||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| |||    
T  29123800 gttatttggaaagatcgcaatttgaggattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatga 29123899  T
Q  460 aagctaact 468  Q
    |||| ||||    
T  29123900 aagcaaact 29123908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 161 - 508
Target Start/End: Original strand, 4303365 - 4303712
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||  || ||||| ||||| | ||| ||||||||||  |  ||    
T  4303365 taaggaggaggaaagggaccatttgttttttcaatgtgattattatggtcgattatgactcttgatatcgaattggcttggttttgttacggtgtttcat 4303464  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||| ||||  |||||| || |||||| ||||||||||| | ||||||     
T  4303465 ggcaatttatatacccatgctaatcaattttgtgcccttggaggtttttcaaagagttctacgaaagctttgtctattgtttggatttcgattttatttg 4303564  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| |||||||||||||| | || |||||| |||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| ||||    
T  4303565 ttatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaa 4303664  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaa 508  Q
    |||  ||| ||||  ||||  |||| ||||| | | ||||||||||||    
T  4303665 agcacacttcattacgttcaattttgattatcccttttggagacaaaa 4303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 412 - 550
Target Start/End: Original strand, 4723310 - 4723448
Alignment:
Q  412 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 511  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||    
T  4723310 tggaagttcttattaaaagggtcaaacttcaaacgttttggtggttgaaggctaactacatcttgttcgtttttgattattcttattggagacaaaatcc 4723409  T
Q  512 tttaccttgtttaaatactattttgtaaagtctgttttt 550  Q
    ||||||||||||| | ||| |||||||||||||||||||    
T  4723410 tttaccttgtttacagactgttttgtaaagtctgttttt 4723448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 161 - 514
Target Start/End: Complemental strand, 12915850 - 12915497
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| ||  |||| ||||| ||||||||  ||||||| |||||||||||  || ||||| | ||| | ||| ||||||||||| |  ||    
T  12915850 taaggaggaggaaagagacaatttattttttcaatgtgaccattatgggcggttatggctcttggtatcgcagtggcttggtattgttacggttttacat 12915751  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||| || | ||||| ||||| ||||||||||| || || ||||||| ||  |||  |  ||| ||| ||||||||| |||||||||||||| |     
T  12915750 ggtaatttacatactcatgctaatcatttttgtgctctcggtggcttctcaaggaggtctacgttagcgtttactattatttagatttcggtcttatatg 12915651  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     |||||||||||||||||||||||| ||||| ||||| ||  ||| |||| | |||| |||| | |||||||| ||||| ||||||| ||||||||||||    
T  12915650 ttatatggaaagatcgcaacaggagaattttccaaaatcactttgatcatctagaagctcttatggaaagggttaaacttcaaacgtattggtggttgaa 12915551  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaacccttt 514  Q
    ||| |||| ||||   ||||||||| | |||   | |||||||||||| |||||    
T  12915550 agcaaacttcattacattcgtttttgactatcacttttggagacaaaatccttt 12915497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 161 - 524
Target Start/End: Original strand, 29192478 - 29192841
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| ||||||||||| ||| ||||||| || |||||| ||||||||||  | |||||  || | ||  | ||| | ||| |||||||   | | |||    
T  29192478 taaggaagaggaaagggaccatctgttttttcattgtgatcattatggtcgactttggctcttgatttctcagtggcttggtattgttacaactttgaat 29192577  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||| ||||||||||   ||| |||||||||||||| ||||| ||||| || ||| ||| ||  ||| ||||||||||||||||||| |||||      
T  29192578 ggtaatttacattcacatgcttctcaattttgtgctcttgggggtttttcaaaaaactctatgacaggttttactattatttggatttcggttttattcg 29192677  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
      || | ||||||| | |||||||| ||||||||  | ||  ||| | || | |||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  29192678 tcatttagaaagatagaaacaggagaatttttcagcatcattttgattatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaa 29192777  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 524  Q
    ||| || |||||  |||||| |||| | ||| | ||||||||  |||| ||||||| |||||||    
T  29192778 agcgaattacatcatgttcgattttgactatccctattggaggaaaaatcctttactttgttta 29192841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 161 - 485
Target Start/End: Original strand, 50693917 - 50694241
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| |||||||||||||||||||||||  | |||||| ||||||| ||  | |||||| |  | ||  | ||||| ||| |||||||   | | |||    
T  50693917 taaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggtttggtattgttacaactttgaat 50694016  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||||| || ||||| | ||| |||||||||||||||||||||||||| || | |  || |   ||| |  |||||||||||||||| |||||      
T  50694017 ggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtgtaggacatgttttacagttatttggatttcggttttattcg 50694116  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
      || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  50694117 tcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagttcttcttgaaagggttaaacttcaaacgttttggtggctgaa 50694216  T
Q  461 agctaactacattttgttcgttttt 485  Q
    ||| || | |||| |||||| ||||    
T  50694217 agcgaattgcattatgttcgatttt 50694241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 161 - 302
Target Start/End: Complemental strand, 3621561 - 3621420
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||  || || || ||||||| ||| ||||||| ||  |  ||    
T  3621561 taaggaggaggaaagagaccatttttttttccaatgtgatcattatggtcggttatggctcttgttaacgaattggtttggtattgttactgtgtttcat 3621462  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttgga 302  Q
    |||||| ||| |||||||||  ||||||||||||||||||||    
T  3621461 ggcaatctattttcacatgctcatcagttttgtgctcttgga 3621420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 325 - 516
Target Start/End: Complemental strand, 12290687 - 12290496
Alignment:
Q  325 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 424  Q
    |||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| || || ||||||||||| ||||||| ||  ||| | |||| ||||      
T  12290687 aagcttttactattatttggatttcggtcttatttgttatttggaaagatcgaaatagaaggatttttcagaaccaaagtgaacatctcgaagctctttc 12290588  T
Q  425 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttac 516  Q
     |||||||| ||||| || || | ||||||||||||||| |||| |||  |||||  |||| | ||||| | ||||||||||||||||||||    
T  12290587 ggaaagggttaaacttcagacttattggtggttgaaagcaaacttcatcatgttcacttttgactattccttttggagacaaaaccctttac 12290496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 258 - 485
Target Start/End: Complemental strand, 34994688 - 34994461
Alignment:
Q  258 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 357  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  34994688 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttat 34994589  T
Q  358 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 457  Q
    |    || ||||||||| | |||||||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  34994588 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 34994489  T
Q  458 gaaagctaactacattttgttcgttttt 485  Q
    |||||| || ||||||||||||| ||||    
T  34994488 gaaagcgaattacattttgttcgatttt 34994461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 366 - 551
Target Start/End: Complemental strand, 3621423 - 3621238
Alignment:
Q  366 tggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagcta 465  Q
    ||||||||||| ||||||||||||||||| ||||||| ||  ||| | |||| |||| |||||||||| ||||| || || | ||||||||||||||| |    
T  3621423 tggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagacttattggtggttgaaagcaa 3621324  T
Q  466 actacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttttt 551  Q
    |||   |  |||||| |||| | ||||||| |||||||||||||| ||||| ||||||| | ||| |  ||||| |||||||||||    
T  3621323 actttgtcatgttcgcttttgactattctttttggagacaaaaccatttacattgtttacagactgtcatgtaatgtctgtttttt 3621238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 161 - 485
Target Start/End: Complemental strand, 36951260 - 36950936
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| |||||||||||||||||||||||  | |||||| ||||||| ||  | |||||| |  | ||  | ||| | ||| |||||||   ||| |||    
T  36951260 taaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggcttggttttgttacaactctgaat 36951161  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| ||||| || || |||||      
T  36951160 ggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaaatctaggacaggatttacagttatctggatgtctgttttattcg 36951061  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
      || ||||||||||| ||||| || |||||||| || ||  ||| |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||    
T  36951060 tcatttggaaagatcgaaacagaagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaa 36950961  T
Q  461 agctaactacattttgttcgttttt 485  Q
    ||| || ||| || |||||| ||||    
T  36950960 agcgaattacgttatgttcgatttt 36950936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 485
Target Start/End: Original strand, 17469287 - 17469611
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| |||||||||||||||||||||||  | |||||| ||||||| ||  | |||||| |  | ||  | ||| | ||| |||||||   ||| |||    
T  17469287 taaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttattttctcagtggcttggtattgttacaactctgaat 17469386  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttcta-ttatttggatttcggtcttattt 359  Q
    || |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || ||  |||| || ||||||| ||||| |  |||||     
T  17469387 ggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacagg-ttttatagttatttgaatttcagctttattc 17469485  T
Q  360 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 459  Q
       || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||| ||||||||||||| | ||||| ||||| ||||||||| |||    
T  17469486 gtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacattttggtggctga 17469585  T
Q  460 aagctaactacattttgttcgttttt 485  Q
    |||| || |||||| |||||| ||||    
T  17469586 aagcgaattacattatgttcgatttt 17469611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 28858177 - 28858304
Alignment:
Q  24 aaagaatgttgtgcttggcttgatacagggcagttcccacctgatctcaatatgaaaaatattgcaattatacccaaaggcaattccctacacagtatga 123  Q
    ||||||||||||||||||||||| |  || || ||||| || || || ||||||| |||||||||  |||| || |||||  |||||| ||| |||||||    
T  28858177 aaagaatgttgtgcttggcttgacatgggtcaattcccgccggacctgaatatgacaaatattgctcttattccaaaaggtcattcccaacatagtatga 28858276  T
Q  124 aggattggcgtccaatagctctctgtaa 151  Q
    |||||||||| || ||||||||||||||    
T  28858277 aggattggcgccctatagctctctgtaa 28858304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 473
Target Start/End: Complemental strand, 24059596 - 24059390
Alignment:
Q  267 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 366  Q
    |||||| | ||| ||||||||||||  |||||| |||| ||||||||||||||   || | |||| |||||||||||||||||||||||||||  ||| |    
T  24059596 ttatatgctcattcaaatcagttttaagctcttagagggttctcaaagaattcaaggacatcattctctattatttggatttcggtcttatttgttatct 24059497  T
Q  367 ggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 466  Q
    | ||||| || ||||  || |||||| | || ||  ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  24059496 gaaaagaccgtaacaatagaattttttataatcattttgatcagcttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaa 24059397  T
Q  467 ctacatt 473  Q
    |||||||    
T  24059396 ctacatt 24059390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 515
Target Start/End: Complemental strand, 25135164 - 25134983
Alignment:
Q  334 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 433  Q
    |||||||||||||||| |||||||||  ||| ||||||||||| ||||| ||  ||||||| ||  |  | | |||  | | ||  ||||| |||| |||    
T  25135164 ctattatttggatttcagtcttatttgttatttggaaagatcgtaacagtagagtttttcataatgacttggatcagcttgcagggcttctcgaaaaggt 25135065  T
Q  434 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacccttta 515  Q
     |||| |||||| | ||||||||||||||| ||||||||| ||||||  ||  | ||||||| |||||| ||||| ||||||    
T  25135064 taaacaccaaacttattggtggttgaaagcgaactacattatgttcgacttcgagtattctttttggaggcaaaatccttta 25134983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 161 - 553
Target Start/End: Original strand, 27914764 - 27915156
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||    
T  27914764 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgatatcagattggttaggttttgttacggttctcaat 27914863  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27914864 ggcaatttatattcacatgcaaaccagttttgtgctcttggaggtttctcaaagaattctttgaaagcatttactattatttggatttcggtcttattta 27914963  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27914964 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttgaaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 27915063  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 553  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  27915064 agctaactacatattgttcgttttttattattcttattggagacaaaaccctttaccttgtttacagaatattttgtaaagtctgttttttgg 27915156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 165 - 560
Target Start/End: Complemental strand, 23384898 - 23384516
Alignment:
Q  165 gaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatggca 264  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  23384898 gaggaggaaagtgatcatttgttcttccaatgtgattattatggttggttatggcttatgctatcgaattggttaggttttgttacggttctcaatggca 23384799  T
Q  265 atttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactat 364  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23384798 atttatattcacatgcaaatcagttttgtactcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactat 23384699  T
Q  365 atggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagct 464  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23384698 atggaaagatcacaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaatgttttggtggttgaaagct 23384599  T
Q  465 aactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgggcctttg 560  Q
    |||||||| ||||||||||             |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23384598 aactacatattgttcgttt-------------ttggagacaaaaccctttaccttgtttacagactattttgtaaagtctgttttttgggcctttg 23384516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 161 - 554
Target Start/End: Complemental strand, 21963467 - 21963074
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||| |||    
T  21963467 taaggaggaggaaaaggatcatttgttttttcgatgtgattattatggtaggttatggcttatgctatcagattggttaggttttgtgacggttcttaat 21963368  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||| | || |||| |||||||||||||||||||||||||||||||    
T  21963367 ggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctcaaagcattttgtgcaagctttttctattatttggatttcggtcttattta 21963268  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21963267 ctatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaa 21963168  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttggg 554  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||||||| | |||||| ||||||||||||||||||||    
T  21963167 agctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttacattgtttacagactattgtgtaaagtctgttttttggg 21963074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 161 - 544
Target Start/End: Complemental strand, 32349933 - 32349550
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  32349933 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggcttatgctatcggattggttaggatttgttacggttctcaat 32349834  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||  |    
T  32349833 ggcaatttatatactcatgctaatcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttataca 32349734  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||| | || || |||||||| |||||||| ||||||||||||| ||||||    
T  32349733 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcttttgaaggtgctacttgaaagagtcaaacttcaaacgttttggtagttgaa 32349634  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtct 544  Q
    || ||||||||| |||||||||||| |||| ||||||||||||  ||| ||||||||||||||| | ||| |||||||||||||    
T  32349633 agttaactacatcttgttcgtttttgattactcttattggagaataaatcctttaccttgtttacagactgttttgtaaagtct 32349550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 161 - 407
Target Start/End: Complemental strand, 30275948 - 30275703
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||     
T  30275948 taaggaggaggaaagagatcatttgtttttccaatgtgattattatggtcgattatgacttatgttatcggattggttaggttttgttacggttctcaac 30275849  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| ||||||||||| |||| | |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||    
T  30275848 ggcaatttatatactcatgctaatcagttttgcgctc-tagaggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatata 30275750  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgtt 407  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  30275749 ctatatgaaaagatcgcaacaggagaattttccaaaaccaaattgtt 30275703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 161 - 468
Target Start/End: Complemental strand, 38938531 - 38938224
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||  || ||||| ||||| | ||| |||||| |||  | |||    
T  38938531 taaggaggaggaaagggaccatttattttttcaatgtgattattatggtcgattatgactcttgatatcgaattggcttggttttgttatggtgtttaat 38938432  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| ||||||| ||||| |||||||||||| |||| || |||||||||||| ||||||| ||| |||||||||||||||| |||||||||     
T  38938431 ggcaatttatatacacatgctaatcatttttgtgctcttagaggcttttcaaagaattctatgaaagcttttactattatttggatttctgtcttatttg 38938332  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| |||||||||||||||| || |||||| |||||||| || |  ||| | |||| ||||||||||||||| ||||| ||||| |||||| |||||||    
T  38938331 ttatttggaaagatcgcaacatgatgattttccaaaaccatatggaccatcttgaagctcttcttgaaagggttaaacttcaaactttttggcggttgaa 38938232  T
Q  461 agctaact 468  Q
    ||| ||||    
T  38938231 agcaaact 38938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 417 - 548
Target Start/End: Complemental strand, 30274532 - 30274400
Alignment:
Q  417 gttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggag-acaaaacccttta 515  Q
    ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||    
T  30274532 gttctacttgaaagagtcaaacttcaaacattttggtggttgaaagctaactacatcttgttcgttttttattattcttattggagaaaaaaatccttta 30274433  T
Q  516 ccttgtttaaatactattttgtaaagtctgttt 548  Q
    ||||||||| | ||| |||||||||||||||||    
T  30274432 ccttgtttacagactgttttgtaaagtctgttt 30274400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 259 - 545
Target Start/End: Original strand, 33937038 - 33937322
Alignment:
Q  259 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 358  Q
    |||| |||||| | |||||||| |  || |||||||||||||||||||| ||||| ||  ||  || || |||| || |||||||||||||||| |||||    
T  33937038 atggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaa--ctacgacaggatttactgttatttggatttcggttttatt 33937135  T
Q  359 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 458  Q
        || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  33937136 cgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttg 33937235  T
Q  459 aaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 545  Q
    ||||| || |||||  |||||| |||| | ||| | ||||||||| |||| |||||| |||||||| | |||  ||||||| |||||    
T  33937236 aaagcgaattacatcatgttcgattttgactatccctattggagaaaaaatcctttagcttgtttacagactgctttgtaatgtctg 33937322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 244 - 545
Target Start/End: Complemental strand, 22298888 - 22298587
Alignment:
Q  244 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 343  Q
    ||||||||||| |  |||| |||||| | |||||||| |  || |||||||||||||||||||||||||| || |||  || ||  ||| || | |||||    
T  22298888 ttgttacggttttacatggtaatttacactcacatgctacccaattttgtgctcttggaggtttctcaaaaaactctaggacaggctttactgtcatttg 22298789  T
Q  344 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 443  Q
    |||||||||  ||||    ||||| |||||| | |||||||| ||||||||||| ||  ||| |||| | |||| ||| ||||||||||| |||||||||    
T  22298788 gatttcggttatattcgtcatatgaaaagattgaaacaggagaatttttcaaaatcactttgatcatcttgaagctctccttgaaagggttaaactccaa 22298689  T
Q  444 acgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtc 543  Q
    |||| ||||||||||||||| || |||||  |||| | |||| | ||| | ||||||||  |||| ||||||  ||||||| | ||| |||||||| |||    
T  22298688 acgtattggtggttgaaagcgaattacatcatgtttgattttgactatccctattggaggaaaaatcctttagtttgtttacagactgttttgtaatgtc 22298589  T
Q  544 tg 545  Q
    ||    
T  22298588 tg 22298587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 259 - 545
Target Start/End: Complemental strand, 1258422 - 1258135
Alignment:
Q  259 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 358  Q
    |||| |||||| | |||||||| |  || |||||||||||||||||||| ||||| || |||  || |  |||| || |||||||||||||||| |||||    
T  1258422 atggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaactctaggacaagatttactgttatttggatttcggttttatt 1258323  T
Q  359 tactatatggaaagatcgcaacaggaggattttt-caaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 457  Q
        || ||||||||| | |||||||| |||||| || || ||  ||| |||| | |||| |||  |||||||||| |||||||||| || |||||||||    
T  1258322 cttcatttggaaagatagaaacaggagaattttttcataatcactttgatcatcttgaagctctctttgaaagggttaaactccaaatgtattggtggtt 1258223  T
Q  458 gaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 545  Q
    |||||| || |||||  || ||| |||| | ||| | ||||||||  |||| ||||||  ||||||| | |||  ||||||| |||||    
T  1258222 gaaagcgaattacatcatgctcgattttgactatccctattggaggaaaaatcctttagtttgtttacagactgctttgtaatgtctg 1258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 373
Target Start/End: Complemental strand, 20007451 - 20007345
Alignment:
Q  267 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 366  Q
    |||||| | ||| ||||||| ||||||| ||||||||| |||||||| |||||   || | |||| |||||||||||||||||||||||||||  ||| |    
T  20007451 ttatatgctcattcaaatcaattttgtgttcttggagggttctcaaaaaattcaaggataacattctctattatttggatttcggtcttatttgttatct 20007352  T
Q  367 ggaaaga 373  Q
    |||||||    
T  20007351 ggaaaga 20007345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 27069901 - 27069945
Alignment:
Q  119 tatgaaggattggcgtccaatagctctctgtaatgtactttataa 163  Q
    ||||||||||||||| || |||||||| |||||||||||||||||    
T  27069901 tatgaaggattggcgacctatagctctgtgtaatgtactttataa 27069945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 20468716 - 20468759
Alignment:
Q  120 atgaaggattggcgtccaatagctctctgtaatgtactttataa 163  Q
    |||||||||||||| || |||||||| |||||||||||||||||    
T  20468716 atgaaggattggcgacctatagctctgtgtaatgtactttataa 20468759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 161 - 554
Target Start/End: Original strand, 9403288 - 9403681
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9403288 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggttttgttacggttctcaat 9403387  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9403388 ggcaatttatattcacatgcaaatcagttttgtgcacttggaggtttctcaaagcattctttgaaagcattttctattatttggatttcggtcttattta 9403487  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9403488 ctatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 9403587  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttggg 554  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||    
T  9403588 agctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttacagactattgtgtaaagtctgttttttggg 9403681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 162 - 553
Target Start/End: Original strand, 37075754 - 37076145
Alignment:
Q  162 aaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatg 261  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37075754 aaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggttctcaatg 37075853  T
Q  262 gcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttac 361  Q
     |||||||||||||||||| |||||||||||||| |||| ||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||||    
T  37075854 acaatttatattcacatgctaatcagttttgtgcacttgaaggattctcaaagcattctgtgcaaactttttctattatttggatttcggtcttatttac 37075953  T
Q  362 tatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaa 461  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37075954 tatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaa 37076053  T
Q  462 gctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 553  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  37076054 gctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttacagactattgtgtaaagtctgttttttgg 37076145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 161 - 553
Target Start/End: Complemental strand, 34981906 - 34981514
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||  ||||||    
T  34981906 taaggaggaggaaagagaccatttattctttcaatgtgattattatggtcggttatggcttatgctatcagattggttaggttttgtcacggcgctcaat 34981807  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || || |||||||||||||| |||||||||||||| |||||||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||     
T  34981806 ggaaacttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctatgcaaactttttctattatttggatttcggtcttatttt 34981707  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34981706 ctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaa 34981607  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 553  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||| ||| |||||||| | |||||| |||||||||||||||||||    
T  34981606 agctaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttacagactattgtgtaaagtctgttttttgg 34981514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 161 - 548
Target Start/End: Complemental strand, 12121645 - 12121258
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||    
T  12121645 taaggaggaggaaatggatcatttgtttttccaatgcgattattatggtcgattatggcttatgctatcggattggttaggtttggttacggttctcaat 12121546  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    | |||||||||| | ||||| ||||||||||| ||||| || |||||||||||||||||| ||||||| ||| ||||||||||||| || | ||||| ||    
T  12121545 gacaatttatatactcatgctaatcagttttgcgctctaggcggtttctcaaagaattctatgaaagcttttactattatttggatctcagccttatata 12121446  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  12121445 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaa 12121346  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 548  Q
    |||||||||||| |||||||||||| |||| |||||||||||| | || ||||||||||||||| | ||| | |||||||||||||||    
T  12121345 agctaactacatcttgttcgtttttgattactcttattggagaaataatcctttaccttgtttacagactgtgttgtaaagtctgttt 12121258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 161 - 546
Target Start/End: Complemental strand, 24819756 - 24819371
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  24819756 taaggaggaggaaagggatcatttgtttttccaatgcgactattatggtcgtttatggcttatgctatcggattggttaggttttgttacggttctcaat 24819657  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||    
T  24819656 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatata 24819557  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||||||||||| |||||||||||||||||| |||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | ||||||||||||    
T  24819556 ctatatggaaagttcgcaacaggaggattttccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaa 24819457  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgt 546  Q
    |||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| | ||| |||||||||||||||    
T  24819456 agctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacagactgttttgtaaagtctgt 24819371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 161 - 545
Target Start/End: Original strand, 36575545 - 36575929
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  36575545 taaggaggaggaaagggatcatttgtttttccaatgcgacttttatggtcgtttatggcttatgctatcggattggttaggttttgttacggttctcaat 36575644  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||    
T  36575645 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatata 36575744  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||| ||||||||||||| || |||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | ||||||||||||    
T  36575745 ctatttggaaagattgcaacaggaggatattccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaa 36575844  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 545  Q
    |||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| | ||| ||||||||||||||    
T  36575845 agctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacagactgttttgtaaagtctg 36575929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 161 - 549
Target Start/End: Original strand, 40891927 - 40892315
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| || ||||  ||||| | ||| ||||||| ||  |  ||    
T  40891927 taaggaggaggaaatggaccatttgtttttccaatgtgattattatggtcagttatggcttttgatatcaaattggcttggttttgttacagtgtttcat 40892026  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| ||||||  ||||||||||| |||||  |||  ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  40892027 ggcaatttatatacacatgataatcagttttgcgctctaagagacttctcaaagaattctatgaaagcttttactattatttggatttcggtcttattta 40892126  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  40892127 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaa 40892226  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 549  Q
    ||||||||||||   ||||| |||| | ||| | | |||||||||||| || |||  ||||||| | ||| | ||||||||||||||||    
T  40892227 agctaactacatcacgttcgcttttgactatcccttttggagacaaaatcccttatgttgtttacagactgtcttgtaaagtctgtttt 40892315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 161 - 466
Target Start/End: Complemental strand, 586843 - 586538
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||| ||||| | ||| ||||||||||  |  ||    
T  586843 taaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggcttctgatatcgaattggcttggttttgttacggtgtttcat 586744  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    | |||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||| | ||||||| ||  |||||||||||||||||||||||||||    
T  586743 gacaatttatatacacatgctaatcagttttgcgctcttggaggcttctcaaagaattatatgaaagctttcactattatttggatttcggtcttattta 586644  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||||||||||||||| ||| | ||||| || ||||||||||||| | | ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  586643 ctatatggaaagatcgaaaccgaaggatattccaaaaccaaattgattaattggaagttcttcttgaaagggttaaacttcaaacgttttggtggttgaa 586544  T
Q  461 agctaa 466  Q
    ||||||    
T  586543 agctaa 586538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 370 - 560
Target Start/End: Original strand, 3483065 - 3483256
Alignment:
Q  370 aagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 469  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3483065 aagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 3483164  T
Q  470 cattttgttcg-ttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgggcctttg 560  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||    
T  3483165 catattgttcgattttttattattcttattggagacaaaaccctttaccttgtttacagactattttgtaaagtctgttttttggacctttg 3483256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 161 - 548
Target Start/End: Original strand, 20705655 - 20706042
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||| || ||||| ||||||| ||| ||||||| ||  |  ||    
T  20705655 taaggaggaggaaagagaccatttgtttttccaatgtgatcattatggccggttatggcttttgatatcgaattggtttggtattgttactgtgtttcat 20705754  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||| ||||| ||||||| |  ||||||||||||| |||||||| ||||| ||||| |||  |  ||| ||| |||||||||||||||||||||||||      
T  20705755 ggcactttattttcacatactcatcagttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtcttattcg 20705854  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| ||||||||||| || |||||||||||||| ||||||  ||  ||| | |||| ||||  ||||||||| ||||| |  || | ||||||||||||    
T  20705855 ttatttggaaagatcgaaataggaggatttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaa 20705954  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 548  Q
    ||| || | |||  ||||   |||| | ||||| | |||||||||||||||||||| ||||||| | ||| | |||||| ||||||||    
T  20705955 agcaaatttcatcatgtttaattttgaatattccttttggagacaaaaccctttacattgtttacagactgtcttgtaatgtctgttt 20706042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 161 - 548
Target Start/End: Original strand, 20873699 - 20874086
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||| || ||||| ||||||| ||| ||||||| ||  |  ||    
T  20873699 taaggaggaggaaagagaccatttgtttttccaatgtgatcattatggccggttatggcttttgatatcgaattggtttggtattgttactgtgtttcat 20873798  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||| ||||| ||||||| |  ||||||||||||| |||||||| ||||| ||||| |||  |  ||| ||| |||||||||||||||||||||||||      
T  20873799 ggcactttattttcacatactcatcagttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtcttattcg 20873898  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| ||||||||||| || |||||||||||||| ||||||  ||  ||| | |||| ||||  ||||||||| ||||| |  || | ||||||||||||    
T  20873899 ttatttggaaagatcgaaataggaggatttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaa 20873998  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 548  Q
    ||| || | |||  ||||   |||| | ||||| | |||||||||||||||||||| ||||||| | ||| | |||||| ||||||||    
T  20873999 agcaaatttcatcatgtttaattttgaatattccttttggagacaaaaccctttacattgtttacagactgtcttgtaatgtctgttt 20874086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 322 - 549
Target Start/End: Complemental strand, 21608136 - 21607909
Alignment:
Q  322 tgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttct 421  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||   ||||||||| ||||||||||||| ||||||||||| |||    
T  21608136 tgaaagcttttactattatttggatttcggtcttatttattatatgaaaagatcgcaaattgaggattttccaaaaccaaattgatcatttggaagctct 21608037  T
Q  422 tcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgt 521  Q
    | |||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||| |||| ||||| | | |||||||||||| ||||||  ||||    
T  21608036 ttttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgattatcccttttggagacaaaaacctttatgttgt 21607937  T
Q  522 ttaaatactattttgtaaagtctgtttt 549  Q
    ||| |  || | ||||||||||||||||    
T  21607936 ttacagtctgtcttgtaaagtctgtttt 21607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 325 - 546
Target Start/End: Complemental strand, 31253113 - 31252892
Alignment:
Q  325 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 424  Q
    |||| ||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||  | || |||||| |||||  |    
T  31253113 aagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacaggaggatattccaaaaccaaagcgctcttttggaggttctatt 31253014  T
Q  425 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 524  Q
    |||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||   || | |||||||| ||||    
T  31253013 tgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgttttttattattcgtattggagaattaatcatttaccttattta 31252914  T
Q  525 aatactattttgtaaagtctgt 546  Q
     |  || |||||||||||||||    
T  31252913 caggctgttttgtaaagtctgt 31252892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 202 - 509
Target Start/End: Complemental strand, 27278620 - 27278313
Alignment:
Q  202 attatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttgg 301  Q
    |||||||||||||||||||  || ||| | ||||||| ||| |||||||| || |  ||||||||||| || ||||||| |||||||||||||||||||     
T  27278620 attatggtcggttatggctcttgatattgcattggtttggtattgttacgattttacatggcaatttaaatacacatgctaatcagttttgtgctcttgc 27278521  T
Q  302 aggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaa 401  Q
    ||||||||||| |||||||   | ||| ||| ||||||| ||| ||| ||||||||||  ||||| ||||||||||||||| |  |||||  |||| ||     
T  27278520 aggtttctcaaggaattctagaacagcttttactattatatgggttttggtcttatttgttatattgaaagatcgcaacagtataattttctaaaatcac 27278421  T
Q  402 attgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattgga 501  Q
    |||| |||| | |||| ||||||| ||||||| ||| | ||| ||| ||||||||||||||| |||| |||  |||| | |||| | ||| ||| || ||    
T  27278420 attgatcatcttgaagctcttcttaaaagggttaaatttcaatcgtattggtggttgaaagcaaacttcatcatgtttgcttttaactatcctttttaga 27278321  T
Q  502 gacaaaac 509  Q
    ||||||||    
T  27278320 gacaaaac 27278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 161 - 545
Target Start/End: Complemental strand, 27868959 - 27868585
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| ||||| | ||| ||||||||||| || |||||| ||||||| ||| | || ||| || | ||  | ||| | ||| |||||||||||||  ||    
T  27868959 taaggaagaggatatggaccatttgttttttcattgtgatcattatggacggctttgacttttgatctcacagtggcttggtattgttacggttctacat 27868860  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||| |||| ||||| ||||| ||||||||| ||||||||||||||||||| |||  || |   ||| ||||||||||||||| |   | ||||     
T  27868859 ggtaatttacattctcatgctaatcaattttgtgcttttggaggtttctcaaagaactctaggacaagttttactattatttggattttg---tcattt- 27868764  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
          ||||||| || |||||||  ||||||||  | || |||| |||| | |||| ||||||||||||| | ||| ||||||||| ||||||||||||    
T  27868763 ------ggaaagaccgaaacaggataatttttcagcatcacattgatcatctagaagctcttcttgaaaggattaaaatccaaacgtattggtggttgaa 27868670  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 545  Q
    ||| || |||||  |||||| |||| | ||||| | ||||||  ||||| |||||  ||||||| | ||| |||||||| |||||    
T  27868669 agcgaattacatcatgttcgattttgactattccttttggaggaaaaactctttagtttgtttagagactgttttgtaatgtctg 27868585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 259 - 473
Target Start/End: Original strand, 18815654 - 18815868
Alignment:
Q  259 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 358  Q
    ||||||||||| || | ||| ||||||||||||||||||||||||| |||||||| ||||| | || |   || ||||||||||||||||||||||||||    
T  18815654 atggcaatttaaatactcattcaaatcagttttgtgctcttggagggttctcaaaaaattcatggacattcttatctattatttggatttcggtcttatt 18815753  T
Q  359 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca-tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 457  Q
    |  ||| | |||||| || ||||| || |||||| | || ||  ||  |||  ||  |||  |||||||||| ||| ||||||||||| | |||||||||    
T  18815754 tgttatctagaaagaccgtaacagtagaatttttaataatcattttcatcagcttacaag-acttcttgaaaaggttaaactccaaacatattggtggtt 18815852  T
Q  458 gaaagctaactacatt 473  Q
    |||||| |||||||||    
T  18815853 gaaagcgaactacatt 18815868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 27990212 - 27990312
Alignment:
Q  259 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 358  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||||| |||||||| |||||   || | | || ||||||||||||||||||||||||||    
T  27990212 atggcgatttatatactcattcaaatcagttttgtgctcttggagggttctcaaaaaattcaaggacaaccttctctattatttggatttcggtcttatt 27990311  T
Q  359 t 359  Q
    |    
T  27990312 t 27990312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 258 - 490
Target Start/End: Original strand, 45649421 - 45649653
Alignment:
Q  258 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 357  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  ||||||||||||| || ||||    
T  45649421 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatttggatttctgttttat 45649520  T
Q  358 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 457  Q
    |    || || |||||| | ||| |||| |||||||| || ||   || |||| | | || ||||||||||||| | ||||| |||| |||||||||| |    
T  45649521 tcgtcatttgaaaagatagaaactggagaatttttcagaatcactctgatcatcttggagctcttcttgaaaggattaaacttcaaatgttttggtggct 45649620  T
Q  458 gaaagctaactacattttgttcgttttttatta 490  Q
    |||||| || ||||||||||||| |||| ||||    
T  45649621 gaaagcgaattacattttgttcgattttgatta 45649653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 258 - 485
Target Start/End: Complemental strand, 47553251 - 47553024
Alignment:
Q  258 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 357  Q
    ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||| || || |||  || ||  ||| |  |||| |||||||| || ||||    
T  47553251 aatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaagtctaggacaggttttacagttatctggatttcagttttat 47553152  T
Q  358 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 457  Q
    |    || ||||||||| | |||||||| |||||||| || ||  ||| |||| | || | ||| ||||||||| | ||||| ||||||||||||||| |    
T  47553151 tcgtcatttggaaagatagaaacaggagaatttttcagaatcattttgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggct 47553052  T
Q  458 gaaagctaactacattttgttcgttttt 485  Q
    |||||| || ||||||||||||| ||||    
T  47553051 gaaagcgaattacattttgttcgatttt 47553024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 8457467 - 8457559
Alignment:
Q  281 aaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 373  Q
    |||||||||||||||||||||||| |||||||| |||||   || ||  || | |||||||||||||||||||||||||  ||| ||||||||    
T  8457467 aaatcagttttgtgctcttggagggttctcaaaaaattcaaggacagtcttctttattatttggatttcggtcttatttgttatctggaaaga 8457559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 8864935 - 8864799
Alignment:
Q  24 aaagaatgttgtgcttggcttgatacagggcagttcccacctgatctcaatatgaaaaatattgcaattatacccaaaggcaattccctacacagtatga 123  Q
    ||||| |||||||||||||||||||| || || || ||  | ||| | |||||||  ||||||||  |||| || ||||| ||||| | ||| || ||||    
T  8864935 aaagagtgttgtgcttggcttgatacgggacaatttccttccgatttgaatatgacgaatattgctcttattcctaaagggaattcgcaacatagcatga 8864836  T
Q  124 aggattggcgtccaatagctctctgtaatgtacttta 160  Q
    ||||||||||||  ||||||||||| ||||| |||||    
T  8864835 aggattggcgtctgatagctctctgcaatgttcttta 8864799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 478
Target Start/End: Original strand, 22865911 - 22866228
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| ||||||||||||||| ||||||||   |||||| ||||||| ||  | |||||| |  | ||  | ||| | ||| | ||||| | ||| |||    
T  22865911 taaggaagaggaaagggatcatctgtttttcacttgtgatcattatgggcgactttggcttttaatttctcagtggcttggtatcgttacagctctgaat 22866010  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||||| || ||||| | ||| ||||||| |||||||||||||||||| || |||  || |   |||    |||| |||||||| || |||||      
T  22866011 ggtaatttatactctcatgctactcaattttgtggtcttggaggtttctcaaaaaagtctaggacaagttttagagttatctggatttcagttttattcg 22866110  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
      || ||||||||| | |||| ||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||    
T  22866111 tcatttggaaagatagaaacatgagaatttttcagaatcattctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaa 22866210  T
Q  461 agctaactacattttgtt 478  Q
    ||| || |||||| ||||    
T  22866211 agcgaattacattatgtt 22866228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 473
Target Start/End: Complemental strand, 5196519 - 5196380
Alignment:
Q  334 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 433  Q
    |||||||||||||| ||| |||||||  ||| || ||||||| ||||||||| |||||||| ||  | |||| |||  | | ||  ||| | |||| |||    
T  5196519 ctattatttggattgcggccttatttgttatttgaaaagatcacaacaggagaatttttcacaattagattgatcagcttgcagcgcttgtagaaaaggt 5196420  T
Q  434 caaactccaaacgttttggtggttgaaagctaactacatt 473  Q
     |||||| |||||| |||||||||||||||  ||||||||    
T  5196419 taaactctaaacgtattggtggttgaaagcgcactacatt 5196380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 161 - 553
Target Start/End: Original strand, 10462300 - 10462692
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  10462300 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgatatcggattggttaggttttgttacggttctcaat 10462399  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  10462400 ggcaatttatattcacatgcaaaccagatttgtgctcttggaggtttctcaaagaattctgtgaaagcatttactattatttggatttcggtcttattta 10462499  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10462500 ctatatggaaagatcgcaataggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaa 10462599  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 553  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  10462600 agctaactacatattgttcgttttttattattcttattggagacaaaaccctttaccttgtttacagaatattttgtaaagtctgttttttgg 10462692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 161 - 554
Target Start/End: Original strand, 5825132 - 5825525
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  5825132 taaggaggaggaaagggatcatttgttttttcgatgtgattattatggtaggttatggcttatgctatcggattggttaggttttgttacggttcttaat 5825231  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||| | || |||| |||||||||||||||||||||||||||||||    
T  5825232 ggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctcaaagcattatgtgcaagctttttctattatttggatttcggtcttattta 5825331  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5825332 ctatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaa 5825431  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttggg 554  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||| | |||||| ||||||||||||||||||||    
T  5825432 agctaactacatattgttcgttttttattattcttattggaggcaaaatcctttacattgtttacaaactattgtgtaaagtctgttttttggg 5825525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 161 - 553
Target Start/End: Original strand, 6678739 - 6679131
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6678739 taaggaggaggaaagtgatcatttgttttttcaatgtgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggttctcaat 6678838  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    | |||||| ||||||||||| |||||||||||||| ||||||||  |||||||| | ||| || |||| |||||||||||||||||||||||||||||||    
T  6678839 gacaatttttattcacatgctaatcagttttgtgcacttggaggagtctcaaagcactctgtgcaagctttttctattatttggatttcggtcttattta 6678938  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6678939 ctatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaa 6679038  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 553  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||| |||||||||||||||||||    
T  6679039 agctaactacatattgttcgttttttattattcttattggaggcaaaatcctttaccttgtttacagactattgtgtaaagtctgttttttgg 6679131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 161 - 468
Target Start/End: Complemental strand, 27891757 - 27891450
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||  || ||||| ||||||| ||| ||||||||||  |  ||    
T  27891757 taaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttacggtgtttcat 27891658  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||  || | | ||| ||||||| ||||||| ||||||||||     
T  27891657 ggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaaagaagtctaggacatcttttactattatatggatttaggtcttatttg 27891558  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| ||||||||||||||||||||||||||||| ||||||||||  ||| |  ||| |||| |||||||||| ||||| ||||| | ||||||||||||    
T  27891557 ttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatctcaaagctctttttgaaagggttaaacttcaaacttattggtggttgaa 27891458  T
Q  461 agctaact 468  Q
    ||| ||||    
T  27891457 agcaaact 27891450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 161 - 463
Target Start/End: Complemental strand, 11266084 - 11265782
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  || | ||| ||||| | ||| |||||||||| ||  |     
T  11266084 taaggaggaggaaagggaccatttgttttttcaatgtgactattatggtcggttatggctcttgatttcgaattggcttggttttgttacggtgctacac 11265985  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || ||||||    ||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||     
T  11265984 ggaaatttaacaacacatgctaatcagttttgtgctcttggaggtttctcaaggaagtctatgaaagcttttactattatttggatttcggtcttatttg 11265885  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| ||||||||||| |||||||||||||||||  | ||  | | |||| | |||| ||| ||||||||||| ||||| ||||| | ||||||||||||    
T  11265884 ttatttggaaagatcgtaacaggaggatttttcagcatcatttggatcatcttgaagctctccttgaaagggttaaacttcaaacttattggtggttgaa 11265785  T
Q  461 agc 463  Q
    |||    
T  11265784 agc 11265782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 161 - 539
Target Start/End: Original strand, 31962835 - 31963213
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| ||||| ||||| ||||||||||| || |||||| ||||||| ||| | |||||| || | ||  | ||| | ||| |||||||| ||||  ||    
T  31962835 taaggaagaggatagggaccatttgttttttcattgtgatcattatggacggctttggcttttgatctcacagtggcttggtattgttacgattctacat 31962934  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||| |||  || ||  ||| ||||||||| |||||||||  |||||     
T  31962935 ggtaatttacattctcatgctaatcaattttgtggtcttggaggtttctcaaagaactctaggacaggttttactattatttcgatttcggtactatttg 31963034  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
      || |||||||| || |||||||| ||||||||  | || |||| |||| | |||| ||||||||||||||| ||| ||||||||| ||||||||||||    
T  31963035 tcatttggaaagaccgaaacaggagaatttttcagcatcacattgatcatctagaagctcttcttgaaagggttaaaatccaaacgtattggtggttgaa 31963134  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaa 539  Q
    ||| || |||||  |||| | |||| | ||| | | |||||   |||||||||||  ||||||||| ||| ||||||||    
T  31963135 agcgaattacatcatgtttgattttgactatcccttttggacgaaaaaccctttagtttgtttaaagactgttttgtaa 31963213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 288 - 490
Target Start/End: Complemental strand, 38931701 - 38931499
Alignment:
Q  288 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 387  Q
    |||||||||||||||||||||||||| || |||  || ||  ||| |  |||||||||||||||| ||||| |  || ||||||||| | |||||||| |    
T  38931701 ttttgtgctcttggaggtttctcaaaaaactctaggacaggttttacagttatttggatttcggttttattcatcatttggaaagatagaaacaggagaa 38931602  T
Q  388 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgtttttta 487  Q
    ||||||| || ||  ||| |||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||| |||| |    
T  38931601 tttttcagaatcactttgatcatcttgaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagcgaattacattttgttcgattttga 38931502  T
Q  488 tta 490  Q
    |||    
T  38931501 tta 38931499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 161 - 468
Target Start/End: Complemental strand, 29150364 - 29150057
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| |||||||| || ||||| ||||| ||||||||  ||||||| |||||||||||  || ||||  ||||  |  || ||||||||||| |  ||    
T  29150364 taaggacgaggaaagagaccatttattttttcaatgtgaccattatggccggttatggctcttgatatcacattgactctgtattgttacggttttacat 29150265  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    | ||||||| || | ||||| ||||||||||||||||| ||  | |||||||||| ||||  || ||| ||| ||||||||||||||| | |||||| |     
T  29150264 gacaatttaaatactcatgctaatcagttttgtgctctcggtagcttctcaaagagttctacgatagcgtttactattatttggattttgatcttatatg 29150165  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||||||||||||||| || || |  ||||| ||||| ||  ||| |||| | |||| |||| |||||||||| ||||| ||||||| || |||||||||    
T  29150164 ttatatggaaagatcgaaagagaaaaattttccaaaatcactttgatcatcttgaagctcttattgaaagggttaaacttcaaacgtattcgtggttgaa 29150065  T
Q  461 agctaact 468  Q
    ||| ||||    
T  29150064 agcaaact 29150057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 474 - 550
Target Start/End: Complemental strand, 3998600 - 3998524
Alignment:
Q  474 ttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  3998600 ttgttcgttttttattattcttattggagacaaaaccctttaccttgtttacagactgttttgtagagtctgttttt 3998524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 288 - 478
Target Start/End: Complemental strand, 8895316 - 8895126
Alignment:
Q  288 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 387  Q
    |||||||||||||||||||||||||| ||||||  || ||  ||| |  ||||||||||||| || |||||    || ||||||||| | |||||||| |    
T  8895316 ttttgtgctcttggaggtttctcaaaaaattctaggacaggttttacagttatttggatttcagttttattcgtcatttggaaagatagaaacaggagaa 8895217  T
Q  388 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtt 478  Q
    ||||||| || ||  | | |||| |  ||| ||||||||||||||| ||||| |||||| ||| |||||||||||| || |||||||||||    
T  8895216 tttttcagaatcacttagatcatcttaaagctcttcttgaaagggttaaacttcaaacggtttagtggttgaaagcgaattacattttgtt 8895126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 42762819 - 42762863
Alignment:
Q  119 tatgaaggattggcgtccaatagctctctgtaatgtactttataa 163  Q
    ||||||||||||||| || |||||||| |||||||||||||||||    
T  42762819 tatgaaggattggcgacctatagctctgtgtaatgtactttataa 42762863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 485
Target Start/End: Complemental strand, 29322599 - 29322528
Alignment:
Q  414 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 485  Q
    |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || || ||| |||||| ||||    
T  29322599 gaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattatattatgttcgatttt 29322528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 165 - 550
Target Start/End: Original strand, 17153974 - 17154360
Alignment:
Q  165 gaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatggca 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||    
T  17153974 gaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctattggattggttaggttttgttacggttctcaatgaca 17154073  T
Q  265 atttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactat 364  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  17154074 atttatattcacatgcaaatcagttttgcgctcttggaggtttctcaaagaattctttgaaagcatttactattatttggatttcagtcttatttactat 17154173  T
Q  365 atggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagct 464  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17154174 atggaaagattgcaacaggaggattttccaaaaccaaattgttcatttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagct 17154273  T
Q  465 aactacattttgttcgttttttattattcttattggag-acaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 550  Q
    |||||| | ||||||||||||||||||||||||||||| | |||||||||||||||||||| | ||| |||||||||||||||||||    
T  17154274 aactacgtattgttcgttttttattattcttattggagaaaaaaaccctttaccttgtttacagactgttttgtaaagtctgttttt 17154360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 162 - 553
Target Start/End: Original strand, 53152249 - 53152640
Alignment:
Q  162 aaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatg 261  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53152249 aaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggcttatgctatcggattggttaggtattgttacggttctcaatg 53152348  T
Q  262 gcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttac 361  Q
     |||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||    
T  53152349 acaatttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctgtgcaagctttttctattatttggatttcggtcttatttac 53152448  T
Q  362 tatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaa 461  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53152449 tatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaa 53152548  T
Q  462 gctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 553  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  53152549 gctaactacatattgttcgtttttgattattcttattggaggcaaaaccctttaccttgtttacagactattgtgtaaagtctgttttttgg 53152640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 161 - 549
Target Start/End: Original strand, 23571784 - 23572172
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| | |||    
T  23571784 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcggttatggcttttgctatcggattggttaggttttgctacggtttttaat 23571883  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||     
T  23571884 ggcaatttatatacacatgctaatcagttttgtgcttttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtattatttt 23571983  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  23571984 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttctaattgaaagggtcaaacttcaaacgttttggtggttgaa 23572083  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 549  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||||||| |||  ||||||| | ||| ||||||||||||| ||||    
T  23572084 agctaactgcatcttgttcgttttttattatccttattggagacaaaaccccttatgttgtttacagactgttttgtaaagtctctttt 23572172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 161 - 520
Target Start/End: Complemental strand, 3514743 - 3514384
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  3514743 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgcttatggcttatgctatccgattggttaggttttgttacggttctcaat 3514644  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||| ||    
T  3514643 ggcaatttatatactcatgctaatcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatctcggtcttatata 3514544  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  3514543 ctatttggaaagatcgcaacaggaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaa 3514444  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttg 520  Q
    |||||||||||| ||||||||||||||||| |||||||| ||| | || ||| |||||||    
T  3514443 agctaactacatcttgttcgttttttattactcttattgaagaaataatcctataccttg 3514384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 161 - 545
Target Start/End: Complemental strand, 9819119 - 9818733
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||| | ||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  9819119 taaggaggaggacaaggatcatttgtttttccaatgcgacttttatggtcgtttatggcttatgctatcggattggttaggttttgttatggttctcaat 9819020  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||| | ||||||| ||| |||| ||||||||||||||||||| ||    
T  9819019 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattttatgaaagcttttactatcatttggatttcggtcttatata 9818920  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||||||| ||||||||||||||||||||||||||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | ||||||||||||    
T  9818919 ctatatgggaagatcgcaacaggaggatttttcaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaa 9818820  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttg--tttaaatactattttgtaaagtctg 545  Q
    |||||| ||||| |||||||||||||||||||| |||||||||   || | |||||||||  |||| | ||| ||||||||||||||    
T  9818819 agctaattacatcttgttcgttttttattattcgtattggagaattaatcatttaccttgtttttacagactgttttgtaaagtctg 9818733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 325 - 554
Target Start/End: Complemental strand, 32945786 - 32945557
Alignment:
Q  325 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 424  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  32945786 aagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttct 32945687  T
Q  425 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 524  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32945686 tgaaagggtcaaactccaaacgttttggtggttgaaagttaactacatattgttcgttttttattattcttattggagacaaaaccttttaccttgttta 32945587  T
Q  525 aatactattttgtaaagtctgttttttggg 554  Q
     | |||||| ||||||||||||||||||||    
T  32945586 cagactattgtgtaaagtctgttttttggg 32945557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 161 - 549
Target Start/End: Complemental strand, 48547613 - 48547225
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggt-tctcaa 259  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||  || ||||| ||||||| ||| |||||||||| ||||||    
T  48547613 taaggaggaggaaagggaccatttgttttttcaatgtgatcattatggtcgattatggctcttgatatcgaattggtttggtattgttacggtgtctcaa 48547514  T
Q  260 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 359  Q
     |||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||  || | | ||| ||||||| ||||||||||||||||||    
T  48547513 -ggcaatttaatttcacatgctaatcagttttgtgctcttggaggtttctcaaagaagtctaggacaacttttactattatatggatttcggtcttattt 48547415  T
Q  360 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 459  Q
      ||| ||||||||||||||||||||||||||||| ||||||||||  ||| | |||| |||| |||||||||| ||||| ||||| | |||||||||||    
T  48547414 gttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatctcgaagctctttttgaaagggttaaacttcaaacttattggtggttga 48547315  T
Q  460 aagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 549  Q
    |||| |||| |||   ||||| |||| ||||| ||| |||||||||||| || |||| ||||||| | ||| |  ||||| |||||||||    
T  48547314 aagcaaacttcatcacgttcgcttttgattatcctttttggagacaaaatccgttacattgtttacagactgtcatgtaatgtctgtttt 48547225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 160 - 550
Target Start/End: Complemental strand, 42462780 - 42462390
Alignment:
Q  160 ataaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaa 259  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||  ||||  | ||| |||||||| |  |  |    
T  42462780 ataaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggcttttgatatcaaattgacttggttttgttacgatgtttca 42462681  T
Q  260 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 359  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||| | ||||||  ||| ||||||||||||||||||||||||||    
T  42462680 tggcaatttatatacacatgctaatcagttttgtgctcttggaggcttttcaaagaattatatgaaaggttttactattatttggatttcggtcttattt 42462581  T
Q  360 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 459  Q
      ||| || ||||||||||||| ||||||||| |||||||| |    |||| | |||| ||||||||||||||| ||||| ||||| |||||||||||||    
T  42462580 gttatttgaaaagatcgcaacatgaggattttccaaaaccatacgaatcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggttga 42462481  T
Q  460 aagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 550  Q
    ||||||||| |||  |||||| |||| ||||| |   |||||||||||| |  |||  ||||||| | ||| | |||||| ||||||||||    
T  42462480 aagctaacttcatcatgttcgcttttgattatcccatttggagacaaaatctcttatgttgtttatagactgtcttgtaatgtctgttttt 42462390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 161 - 547
Target Start/End: Complemental strand, 23603322 - 23602936
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| |||||| ||||||| |||||||||| |||||||||  |||||||  || | ||| ||||| | ||| ||||||||||  |  ||    
T  23603322 taaggaggaggaaagagatcatctgttttttcaatgtgatttttatggtcgactatggctcttggtttcgaattggcttggttttgttacggtgtttcat 23603223  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| | ||||||||||||||||||||| || |||||||||||| |||||||  | |||||||||||||||||| | ||||||     
T  23603222 ggcaatttatatcctcatgctattcagttttgtgctcttggaggattttcaaagaattctatgaaagctctgtctattatttggatttcgattttatttg 23603123  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| |||||||||||||||  || |||||| |||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||    
T  23603122 ttatttggaaagatcgcaacttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaa 23603023  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtt 547  Q
    ||| |||| |||    |||  |||| ||||| | | |||||||||||| ||||||  ||||||| | ||| || ||||| |||||||    
T  23603022 agcaaactccatcaccttcagttttgattatcccttttggagacaaaatcctttatgttgtttacagactgttatgtaatgtctgtt 23602936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 161 - 514
Target Start/End: Complemental strand, 8595316 - 8594963
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||  || ||||  ||| | | ||| ||||||||||  |  ||    
T  8595316 taaggaggaggaaagggaccatttgttttttcaatgtgattattatggtcgtttatggctcttgatatcaaattcgcttggttttgttacggtgtttcat 8595217  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    | ||||||| || | ||||| || || |||||||| |||||| |||| ||||||| ||||  |||||| || |||||| ||||||||||||| ||||||     
T  8595216 gtcaatttacatacccatgctaaccaattttgtgcccttggatgtttttcaaagagttctacgaaagctttgtctattgtttggatttcggttttatttg 8595117  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| |||||||||||||| | || |||||| |||||||| || | | || | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||    
T  8595116 ttatttggaaagatcgcaatatgaagattttccaaaaccatatgggttatcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaa 8595017  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaacccttt 514  Q
    |||  ||| ||||  ||||  |||| ||||| | | |||||||||||| |||||    
T  8595016 agcacacttcattacgttcaattttgattatcccttttggagacaaaatccttt 8594963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 425 - 550
Target Start/End: Complemental strand, 44879790 - 44879665
Alignment:
Q  425 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 524  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  44879790 tgaaagggtcaaacttcaaacgttttggtggttgaaaactaactacatattgttcgtttttgattattcttattggagacaaaatcctttaccttgttta 44879691  T
Q  525 aatactattttgtaaagtctgttttt 550  Q
     ||||| |||||||||||||||||||    
T  44879690 catactgttttgtaaagtctgttttt 44879665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 348 - 546
Target Start/End: Complemental strand, 9246901 - 9246703
Alignment:
Q  348 tcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgt 447  Q
    |||||||||| |||||| | |||||||| |||||||||||| || |||||||||| ||||| |||||| ||||| |||||||| |||||||| ||||| |    
T  9246901 tcggtcttatatactatttagaaagatcacaacaggaggatattccaaaaccaaagtgttcttttggaggttctacttgaaagagtcaaacttcaaacat 9246802  T
Q  448 tttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgt 546  Q
     |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| |  || |||||||||||||||    
T  9246801 attggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacaggctgttttgtaaagtctgt 9246703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 259 - 461
Target Start/End: Complemental strand, 30737449 - 30737247
Alignment:
Q  259 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 358  Q
    ||||| ||||| || ||||||| |||||||||||| |||||||||||||||||||||| |||  || | | ||| ||||||| |||||||||||||||||    
T  30737449 atggcgatttacatacacatgcgaatcagttttgtactcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatt 30737350  T
Q  359 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 458  Q
    |  |||||| ||||||||||| ||||| ||||| ||||| || |||| |||| | |||| ||||||||||||||| ||||| ||||||| ||||||||||    
T  30737349 tgttatatgaaaagatcgcaagaggagaattttccaaaatcacattgatcatcttgaagctcttcttgaaagggttaaacttcaaacgtattggtggttg 30737250  T
Q  459 aaa 461  Q
    |||    
T  30737249 aaa 30737247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 344 - 472
Target Start/End: Complemental strand, 8542381 - 8542253
Alignment:
Q  344 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 443  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| | |    
T  8542381 gattttggtcttatttactatattgaaagatcgtaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcga 8542282  T
Q  444 acgttttggtggttgaaagctaactacat 472  Q
    |||||||||||||||||||||||||||||    
T  8542281 acgttttggtggttgaaagctaactacat 8542253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 180 - 514
Target Start/End: Original strand, 42459474 - 42459807
Alignment:
Q  180 catttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatggcaatttatattcacatg 279  Q
    ||||| ||||| ||||||||  ||||||| |||||||||||  || ||||| | ||| | ||| ||||||||||| |  |||| |||||| |||| ||||    
T  42459474 catttattttttcaatgtgaccattatggacggttatggctcttggtatcgcagtggcttggtattgttacggttttacatggtaatttacattctcatg 42459573  T
Q  280 caaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaa 379  Q
    | ||||||||||||||||| || || ||||||| || || | ||  ||| ||| |||||||||||||||||||||||| |  ||||||||||||||||||    
T  42459574 ctaatcagttttgtgctctcggtggcttctcaaggagttatatgttagcgtttactattatttggatttcggtcttatatgttatatggaaagatcgcaa 42459673  T
Q  380 caggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttc 479  Q
    ||||| || ||||||||| ||  ||| |||| | |||| |||| | | |||||| ||||| ||||||| ||||||||||||||| ||||  ||   ||||    
T  42459674 cagga-gaattttcaaaatcattttgatcatcttgaagctcttatggtaagggttaaacttcaaacgtattggtggttgaaagcaaactttatcacgttc 42459772  T
Q  480 gttttttattattcttattggagacaaaacccttt 514  Q
    |||||| | | | ||| |||||||||||| |||||    
T  42459773 gtttttgactgtcctttttggagacaaaatccttt 42459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 161 - 502
Target Start/End: Complemental strand, 10754122 - 10753781
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| ||||||||||||||| ||||||| |  |||||| ||||||||||  | |||||| || | ||  | ||| | ||  |||||||   | | |||    
T  10754122 taaggaagaggaaagggatcatctgttttttctttgtgatcattatggtcgtctttggcttttgatttcacagtggcttggatttgttaccactttgaat 10754023  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||| ||||||||||    || ||||| |||||||||||||| || || || ||| ||| ||  ||| ||||||||||||||||||| ||||||     
T  10754022 ggtaatttacattcacatgcttcccaattttgcgctcttggaggtttttcgaaaaaatctgtgacaggttttactattatttggatttcggttttatttg 10753923  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
      |||||||| ||| | ||||| || ||||||||  | ||| ||| |||  | |||||||||||||||||||| |||||||| |||||||||||||||||    
T  10753922 tcatatggaaggatagaaacagaagaatttttcagcaacaatttgatcagcttgaagttcttcttgaaagggttaaactccagacgttttggtggttgaa 10753823  T
Q  461 agctaactacattttgttcgttttttattattcttattggag 502  Q
    ||| || ||||| ||||||| |||| | ||| ||||||||||    
T  10753822 agcgaattacatcttgttcgattttgactatccttattggag 10753781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 161 - 545
Target Start/End: Original strand, 39632995 - 39633379
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| ||||||||||||||| ||||||| || |||||  ||||||||||  | |||||  || | ||  ||||| | ||| |||||||   | | |||    
T  39632995 taaggaagaggaaagggatcatctgttttttcattgtgaccattatggtcgactttggctcttgatttctcattggcttggtattgttacaactttgaat 39633094  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||| ||||||||||   | | |||||||||||||| ||||| || || || |||  || ||  ||| ||||||||||||||||  | |||||      
T  39633095 ggtaatttacattcacatgcttcttaattttgtgctcttgggggtttttcgaaaaactctaggacaggttttactattatttggatttcaattttattcg 39633194  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
      || ||||||||| | ||||| || ||||||||  | ||  ||| |||| | |||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  39633195 tcatttggaaagatagaaacagcagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaa 39633294  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 545  Q
    ||| || |||||  |||||| |||| | ||| | |||||||| ||||| ||||||| ||||||| | |||  ||||||| |||||    
T  39633295 agcgaattacatcatgttcgattttgactatccctattggaggcaaaatcctttactttgtttacaaactgctttgtaatgtctg 39633379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 161 - 485
Target Start/End: Complemental strand, 16664035 - 16663711
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||| |||||||||||||||||||||||  | |||||| ||||||| ||  | |||||| |  | ||  | ||| | | | |||||||   ||| |||    
T  16664035 taaggaagaggaaagggatcatttgttttttaattgtgatcattatgggcgactttggcttttaatttctcagtggcttgttattgttacaactctgaat 16663936  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || |||||||| || ||||| | ||| |||||||||||||||||||||||||| |  |||  || ||  ||| |  |||| |||||||| || |||||      
T  16663935 ggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaatgtctaggacaggttttacagttatctggatttcagttttattcg 16663836  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
      || ||||||||| | ||||| || |||||||| || ||| ||| |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||    
T  16663835 tcatttggaaagatagaaacagaagaatttttcagaatcaatttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaa 16663736  T
Q  461 agctaactacattttgttcgttttt 485  Q
    ||| || |||||| |||||| ||||    
T  16663735 agcgaattacattatgttcgatttt 16663711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 258 - 485
Target Start/End: Complemental strand, 52196249 - 52196022
Alignment:
Q  258 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 357  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  52196249 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatctggatttctgttttat 52196150  T
Q  358 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 457  Q
    |    || ||||||||| | ||||| || |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  52196149 tcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 52196050  T
Q  458 gaaagctaactacattttgttcgttttt 485  Q
    |||||| || |||||| |||||| ||||    
T  52196049 gaaagcaaattacattatgttcgatttt 52196022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 426 - 503
Target Start/End: Complemental strand, 52962710 - 52962633
Alignment:
Q  426 gaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggaga 503  Q
    |||| ||| ||||||||| |||||||||||||||||    ||||||||||||||| |||| |||| ||| ||||||||    
T  52962710 gaaaaggttaaactccaatcgttttggtggttgaaattgtactacattttgttcgattttgattactctgattggaga 52962633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 28393405 - 28393365
Alignment:
Q  333 tctattatttggatttcggtcttatttactatatggaaaga 373  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  28393405 tctattatttggatttcggtcttatttgttatctggaaaga 28393365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 161 - 553
Target Start/End: Original strand, 2959753 - 2960145
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||| || || ||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||  ||||||    
T  2959753 taaggaggaggacagagaccatttattctttcaatgtgattattatggtcggttatggcttatgctatcagattggttaggttttgtcacggcgctcaat 2959852  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    || || |||||||||||||| |||||||||||||| |||||||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||     
T  2959853 ggaaacttatattcacatgctaatcagttttgtgcacttggaggattctcaaagcattctatgtaaactttttctattatttggatttcggtcttatttt 2959952  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2959953 ctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaa 2960052  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 553  Q
    ||| |||||||| |||||||||||| |||||||||||||||| |||||||| ||| |||||||| | |||||| |||||||||||||||||||    
T  2960053 agcgaactacatattgttcgtttttgattattcttattggaggcaaaacccattatcttgtttacaaactattgtgtaaagtctgttttttgg 2960145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 161 - 550
Target Start/End: Original strand, 26077889 - 26078278
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||| |||||||||||| |||||||||||||||||    
T  26077889 taaggaggaggaaagggatcatttgtttttccaatgcgaatattatggtcgcttatggcttatgttatccgattggttaggttttgttacggttctcaat 26077988  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| | ||||| ||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||    
T  26077989 ggcaatttatatactcatgctaatcagttttgcgctctaggagggttctcaaagaattctatgaaagctttttctattatttggatctcggtcttatata 26078088  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| |||||||||||||||||||||||||| || ||||| ||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||    
T  26078089 ctatttggaaagatcgcaacaggaggattttccataaccatattgttcttttggatgttcttcttgaaagagtcaaacttcaaacgttttggtggttgaa 26078188  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 550  Q
    |||||||||||| |||||||||||| |||| |||||||||||| | || |||||| |||| ||| | ||| | |||||||||||||||||    
T  26078189 agctaactacatcttgttcgtttttgattactcttattggagaaataatcctttagcttgcttacagactgtgttgtaaagtctgttttt 26078278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 213 - 549
Target Start/End: Original strand, 31423430 - 31423766
Alignment:
Q  213 ttatggcttatgctatcggattggttaggtcttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 312  Q
    ||||||||  || ||||| ||||||| ||| ||||||||||  |  | | ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31423430 ttatggctcttgatatcgaattggtttggtattgttacggtgtttcacgacaatttaaattcacatgctaatcagttttgtgctcttggaggtttctcaa 31423529  T
Q  313 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 412  Q
    |||| |||  || | | ||| ||||||| ||||||||||||||||||  ||| || ||||||||||||||||||||||| ||||||||||||| |||| |    
T  31423530 agaactctaggacaacttttactattatatggatttcggtcttatttgttatttgaaaagatcgcaacaggaggattttccaaaaccaaattgatcatct 31423629  T
Q  413 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 512  Q
     |||| |||| |||||||||| ||||| ||||| | ||||||||||||||| |||| ||    ||||| |||| | ||| | | |||||||||||| ||     
T  31423630 cgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcagcacgttcgcttttgactatcccttttggagacaaaatcca 31423729  T
Q  513 ttaccttgtttaaatactattttgtaaagtctgtttt 549  Q
    |||  ||||||| | |||||  ||||| |||||||||    
T  31423730 ttatgttgtttacagactatcatgtaatgtctgtttt 31423766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 161 - 508
Target Start/End: Original strand, 26390405 - 26390751
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||| |||||||  |||||||| || ||||| ||| ||||||||||  | || ||  || ||||| ||||  | ||| ||||||||||| |  ||    
T  26390405 taaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtcgactttg-ctcttgatatcgcattgacttggtattgttacggttttacat 26390503  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    ||||| ||  ||  |||||| || ||||||||||| || || ||||||||||||||||||  || | | ||| |||||||||||| ||| |||||||||     
T  26390504 ggcaaattgcatatacatgctaaccagttttgtgccctcggtggtttctcaaagaattctaggacaacttttactattatttggacttctgtcttatttg 26390603  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     |||||||||||||||||||||||| ||||| ||||| || | || |||| | || | ||||||||||||| | || || ||||||||||||||||||||    
T  26390604 ttatatggaaagatcgcaacaggagaattttccaaaatcacagtgatcatctagaggctcttcttgaaaggattaagcttcaaacgttttggtggttgaa 26390703  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaa 508  Q
    |||  |||  ||  |||||| |||| ||||||| | ||||||||||||    
T  26390704 agcacactttatcatgttcgcttttgattattccttttggagacaaaa 26390751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 275 - 524
Target Start/End: Complemental strand, 29530118 - 29529870
Alignment:
Q  275 acatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagat 374  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||  || | | ||| ||||||| |||| ||| |||||||||  |||||||||||||    
T  29530118 acatgctaatcagttttgtgcccttgtaggtttctcaaagaattctaggacaac-tttcctattatctggacttctgtcttatttgttatatggaaagat 29530020  T
Q  375 cgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattt 474  Q
    || ||||| || ||||| ||||| || | || |||| | || | ||||||||||||||| || || ||||| ||||||||||||||||| ||||  ||      
T  29530019 cgtaacagaagaattttccaaaatcacagtgatcatctagatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagcaaactttatca 29529920  T
Q  475 tgttcgttttttattattcttattggagacaaaaccctttaccttgttta 524  Q
    |||||| |||| ||||||| | || ||||||||| ||||||  |||||||    
T  29529919 tgttcgcttttgattattccttttagagacaaaatcctttaagttgttta 29529870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 485
Target Start/End: Original strand, 10801940 - 10802168
Alignment:
Q  258 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc-aaagaattctttgaaagcattttctattatttggatttcggtctta 356  Q
    ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||| ||| || |||  || ||  ||| |  |||| |||||||| || |||    
T  10801940 aatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaaagtctaggacaggttttacagttatctggatttcagtttta 10802039  T
Q  357 tttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 456  Q
    ||    || ||||||||| | |||||||| |||||||| || ||   || |||| | || | ||| ||||||||| | ||||| |||||||||||||||     
T  10802040 ttcgtcatttggaaagatagaaacaggagaatttttcagaatcattctgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggc 10802139  T
Q  457 tgaaagctaactacattttgttcgttttt 485  Q
    ||||||| || |||||| |||||| ||||    
T  10802140 tgaaagcgaattacattatgttcgatttt 10802168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 29532417 - 29532370
Alignment:
Q  160 ataaggaggaggaaagggatcatttgtttttccaatgtgattattatg 207  Q
    |||||||||||||||||||||||||||| || ||||| ||| ||||||    
T  29532417 ataaggaggaggaaagggatcatttgttctttcaatgcgatcattatg 29532370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 161 - 548
Target Start/End: Original strand, 18295559 - 18295946
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  18295559 taaggaggaggaaagggatcatttgtttttccaatgcgattattatggtcgattatggcttatgctatcagattggttaggttttgttatggttctcaat 18295658  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| |  |||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||| ||||| ||    
T  18295659 ggcaatttatatactaatgctaatcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatctcggccttatata 18295758  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||  ||||||| |||||||| ||||||||||||||||||||    
T  18295759 ctatatggaaagatcgcaacaagaggattttccaaaaccaaattgttcttttggaggttctatttgaaagagtcaaacttcaaacgttttggtggttgaa 18295858  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 548  Q
    |||||||||||| |||||||||||| |||| |||||||||||| | || ||||||||||||||| | ||| | |||||||||||||||    
T  18295859 agctaactacatcttgttcgtttttgattactcttattggagaaataatcctttaccttgtttacagactgtgttgtaaagtctgttt 18295946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 165 - 550
Target Start/End: Complemental strand, 2894292 - 2893907
Alignment:
Q  165 gaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatggca 264  Q
    |||||||| | |||||||||||||||||||||  | ||||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  2894292 gaggaggacatggatcatttgtttttccaatgcaactattatggtcgtttatggcttatgatttcggattggttaggttttgttacggttctcaatggca 2894193  T
Q  265 atttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactat 364  Q
    |||||||||| |||||  |||||||||| ||||| || || ||||||||||||||| || |||| ||| |||| ||||||||||||||||||| ||||||    
T  2894192 atttatattctcatgctcatcagttttgcgctctaggtgggttctcaaagaattctatgcaagcttttactatcatttggatttcggtcttatatactat 2894093  T
Q  365 atggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagct 464  Q
    ||| ||||| ||||||||||||||||| ||||| |||| || || ||||||  |||| |||||||| |||||||||||||| | |||||| |||||||||    
T  2894092 atgaaaagaccgcaacaggaggattttccaaaatcaaagtgctcttttggagtttctacttgaaagagtcaaactccaaacatattggtgtttgaaagct 2893993  T
Q  465 aactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 550  Q
    || | ||| |||||||||||||||||||| |||||||||   || ||||||||||||||| | ||| |||||||||||||||||||    
T  2893992 aatttcatcttgttcgttttttattattcgtattggagaattaatcctttaccttgtttacagactgttttgtaaagtctgttttt 2893907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 161 - 551
Target Start/End: Original strand, 28605050 - 28605440
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||  || ||||| ||||||| ||| ||||||| ||  |  ||    
T  28605050 taaggaggaggaaagagaccatttgtttttccaatgtgatcattatggtcggttatggctcttgatatcgaattggtttggtattgttactgtgtttcat 28605149  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||| ||| |||||||||  |||||||||||||||||||||| ||||| ||||| ||| ||| ||| ||| ||||||||||||||||||||||||||     
T  28605150 ggcaatctattttcacatgctcatcagttttgtgctcttggagggttctccaagaagtctatgacagcttttactattatttggatttcggtcttatttg 28605249  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| ||||||||||| ||||||||||||||||| ||||||| ||  ||| | |||| |||| |||||||||| ||||| || |  | |||| |||||||    
T  28605250 ttatttggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagaattattggcggttgaa 28605349  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttttt 551  Q
    ||| |||| | |  |||||| |||| | ||||||| |||||||||||||||||||| ||||||| | ||| |  ||||| |||||||||||    
T  28605350 agcaaacttcgtcatgttcgcttttgactattctttttggagacaaaaccctttacattgtttacagactgtcatgtaatgtctgtttttt 28605440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 261 - 468
Target Start/End: Complemental strand, 667222 - 667016
Alignment:
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||     
T  667222 ggcaatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatttg 667123  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     |||||||||||||||||||||||||||||| |||||||| || | |||||| |||| |||||||||||| ||  |||| ||||  | ||||||||||||    
T  667122 ttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcattttgaagctcttcttgaaagcgt-taacttcaaagatattggtggttgaa 667024  T
Q  461 agctaact 468  Q
    ||| ||||    
T  667023 agcaaact 667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 258 - 485
Target Start/End: Original strand, 5391777 - 5392004
Alignment:
Q  258 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 357  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  5391777 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttat 5391876  T
Q  358 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 457  Q
    |    || ||||||||| | |||||||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  5391877 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 5391976  T
Q  458 gaaagctaactacattttgttcgttttt 485  Q
    |||||| || ||||||||||||| ||||    
T  5391977 gaaagcgaattacattttgttcgatttt 5392004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 334 - 473
Target Start/End: Complemental strand, 17227814 - 17227675
Alignment:
Q  334 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 433  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||||||||  || ||||||||||| || |||| | |  | | || ||||||| |||||||    
T  17227814 ctattatttggatttcggtgttatttgttatttggaaagatcgcaacaaaagaatttttcaaaatcacattgattagcttgcagctcttcttaaaagggt 17227715  T
Q  434 caaactccaaacgttttggtggttgaaagctaactacatt 473  Q
     ||||||||||||| ||||||||||||||| |||| ||||    
T  17227714 taaactccaaacgtattggtggttgaaagcgaacttcatt 17227675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 468
Target Start/End: Original strand, 7218686 - 7218820
Alignment:
Q  334 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 433  Q
    |||| |||||||||||||| |||| |  |||||||||||||||||| ||||| || |||||||| ||  |||||||| | |||| |||| | |||| |||    
T  7218686 ctatcatttggatttcggttttatatgttatatggaaagatcgcaataggagaatatttcaaaaacaggttgttcatcttgaagctcttttggaaaaggt 7218785  T
Q  434 caaactccaaacgttttggtggttgaaagctaact 468  Q
     ||||| ||| ||| ||||||||||||||| ||||    
T  7218786 taaacttcaagcgtattggtggttgaaagcaaact 7218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 472
Target Start/End: Original strand, 9759779 - 9759977
Alignment:
Q  274 cacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 373  Q
    ||||||| || || |||||| |||||||||||||||||||||| |||  ||  |  ||| ||  ||| |||||||||   ||||||  ||| ||||||||    
T  9759779 cacatgctaaccaattttgtcctcttggaggtttctcaaagaactctaggacgggctttactgctatatggatttcgacattatttgttatttggaaaga 9759878  T
Q  374 tcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 472  Q
    ||| |||||||| || |||||||| ||||||| |||| | || | ||||||||  ||||| ||||| |||| || ||||||||||||||| || |||||    
T  9759879 tcgtaacaggagaatatttcaaaatcaaattgatcatcttgatgctcttcttgggagggttaaacttcaaatgtattggtggttgaaagcgaattacat 9759977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 485
Target Start/End: Original strand, 14223505 - 14223656
Alignment:
Q  334 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 433  Q
    ||||||||||||||| |||||||| |  ||||||||| |||||||||| ||| ||||| | ||| ||  ||| |||| |||||| |||| | |||| |||    
T  14223505 ctattatttggattttggtcttatatgttatatggaatgatcgcaacaagagaattttccgaaatcactttgatcatctggaagctcttatggaaacggt 14223604  T
Q  434 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 485  Q
     ||||| ||||||| ||||||||| ||||| |||| |||   ||||||||||    
T  14223605 taaacttcaaacgtattggtggttaaaagcaaacttcatcacgttcgttttt 14223656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 667334 - 667284
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcg 211  Q
    ||||||||||||||||||  |||||||||| |||||||| |||||||||||    
T  667334 taaggaggaggaaagggactatttgttttttcaatgtgactattatggtcg 667284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 7218513 - 7218572
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 220  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||| ||  ||||||||||    
T  7218513 taaggaggaggaaagagaccatttatttttccaatgtgatcattacgggtggttatggct 7218572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 161 - 472
Target Start/End: Original strand, 41342971 - 41343282
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||| | |||    
T  41342971 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttttgctatcggattggcttggttttgttacggtttttaat 41343070  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| || |||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  41343071 ggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtcttattta 41343170  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  41343171 ctatatggaaagatcgcaataggaggattttccaaaaccaaattgttcatttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttgaa 41343270  T
Q  461 agctaactacat 472  Q
    ||||||||||||    
T  41343271 agctaactacat 41343282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 161 - 548
Target Start/End: Complemental strand, 10003990 - 10003603
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  10003990 taaggaggaggaaagggatcatttgtttttcgaatgcgacttttatggtcggttatggcttttgctatcggattggttaggttttgttacggttctcaat 10003891  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||    
T  10003890 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatata 10003791  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||||||||| ||||| || |||||||||| || ||  ||||| ||||| |||||||| |||||||| ||||| | ||||||||| ||    
T  10003790 ctatttggaaagatcgcaacagaaggatattccaaaaccaaagtgctctcttggaggttctacttgaaagagtcaaacttcaaacatattggtggtttaa 10003691  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 548  Q
    |||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| | ||| |||||||||||||||||    
T  10003690 agctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacagactgttttgtaaagtctgttt 10003603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 161 - 524
Target Start/End: Complemental strand, 27030011 - 27029648
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    ||||||||||||||| ||||||||||||||||||||  |   |||||| || |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  27030011 taaggaggaggaaagagatcatttgtttttccaatgcaaagtttatggacgtttatggcttatgctctcggattggttaggttttgttacggttctcaat 27029912  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||||| ||||| ||||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| ||    
T  27029911 ggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatata 27029812  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    |||| ||||||||||||||||||||||| || |||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | ||||||||||||    
T  27029811 ctatttggaaagatcgcaacaggaggatattccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaa 27029712  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 524  Q
    |||||| ||||| |||||||||||| ||||||| |||| |||||  || |||||||||||||||    
T  27029711 agctaattacatcttgttcgtttttcattattcgtatttgagacttaatcctttaccttgttta 27029648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 161 - 549
Target Start/End: Complemental strand, 5557326 - 5556938
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggt-tctcaa 259  Q
    |||||||||||||||||| |||||||||||  |||||||| |||||||||| ||||| ||  || ||||| ||||||| ||| |||||||||| | ||||    
T  5557326 taaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttgatatcgaattggtttggtattgttacggtgtttcaa 5557227  T
Q  260 tggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 359  Q
     |  ||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||| || | | ||| ||||||| ||||||||||||||||||    
T  5557226 -gataatttaatttcacatgctaatcagttttgtgctcttggagctttctcaaagaattcttggataacttttactattatatggatttcggtcttattt 5557128  T
Q  360 actatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttga 459  Q
      | | |||||||||||||||||||||||||||||| ||||||||| |||| | |||| |||| |||||||||| ||||| ||||| |  ||||||||||    
T  5557127 gttgtttggaaagatcgcaacaggaggatttttcaataccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttactggtggttga 5557028  T
Q  460 aagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 549  Q
    |||| |||| |||   ||||| |||| | ||| | | |||||||||||| || |||| ||||||| | ||| |  ||||| |||||||||    
T  5557027 aagcaaacttcatcacgttcgcttttgactatcccttttggagacaaaatccgttacattgtttacagactgtaatgtaatgtctgtttt 5556938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 161 - 508
Target Start/End: Complemental strand, 49369826 - 49369479
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  || ||||| ||||| | ||| ||||||||||  |  ||    
T  49369826 taaggaggaggaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgatatcgaattggcttggttttgttacggtgtttcat 49369727  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    | |||||||||| | ||||| || ||||||| ||| ||||||||||| |||||||||| |  |||||| || |||||||||||||||||| | ||||||     
T  49369726 gacaatttatatactcatgctaaccagttttatgcccttggaggtttttcaaagaattatacgaaagctttgtctattatttggatttcgattttatttg 49369627  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     ||| ||||||||| |||| | || |||||| ||||||||  | | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| ||||    
T  49369626 ttatttggaaagattgcaatatgaagattttccaaaaccatttgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaa 49369527  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaa 508  Q
    ||| |||| |||| ||||   |||| ||||| | | ||||||||||||    
T  49369526 agcaaacttcattatgtttacttttgattatcccttttggagacaaaa 49369479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 325 - 550
Target Start/End: Original strand, 44753748 - 44753973
Alignment:
Q  325 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 424  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||||| ||  | ||||||  |||| ||    
T  44753748 aagcttttactattatttggatttcggtcttatatactatatggaaagaccgcaacagaaggattttccaaaaccaaagtgcacttttggagtttctact 44753847  T
Q  425 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 524  Q
    |||||| |||||||||||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || |||||||||||||||    
T  44753848 tgaaagagtcaaactccaaacatattggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgttta 44753947  T
Q  525 aatactattttgtaaagtctgttttt 550  Q
     | ||| |||||||||||||||||||    
T  44753948 cagactgttttgtaaagtctgttttt 44753973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 357 - 548
Target Start/End: Original strand, 48759777 - 48759968
Alignment:
Q  357 tttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 456  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||| | |||||||| |||||||| ||||||||||||||||    
T  48759777 tttaatatatggaaagatcgcaacaggaagattttccaaaaccaaattgttcttttggaggttttacttgaaagagtcaaacttcaaacgttttggtggt 48759876  T
Q  457 tgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 548  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   || | ||||||||||||| | ||| | |||||||||||||||    
T  48759877 tgaaagctaactacatcttgttcgttttttattattcttattggagaattaatcatttaccttgtttacagactgtgttgtaaagtctgttt 48759968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 334 - 545
Target Start/End: Complemental strand, 37666239 - 37666028
Alignment:
Q  334 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 433  Q
    ||||||||||||||||||| ||||| |  || ||||||||| | |||||||| ||||||||  | ||| ||| |||| | |||| ||| |||||||||||    
T  37666239 ctattatttggatttcggttttattcatcatttggaaagatagaaacaggagaatttttcagcatcaatttgatcatcttgaagctctacttgaaagggt 37666140  T
Q  434 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactatt 533  Q
    |||||||||||| ||||||||||||||| | || |||||| |||||| |||| | ||| | ||||||||  |||| ||||||| ||||||| | |||  |    
T  37666139 caaactccaaacattttggtggttgaaaacgaattacattatgttcgattttgactatccctattggaggaaaaatcctttactttgtttacagactgct 37666040  T
Q  534 ttgtaaagtctg 545  Q
    |||||| |||||    
T  37666039 ttgtaatgtctg 37666028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 259 - 468
Target Start/End: Complemental strand, 45757644 - 45757435
Alignment:
Q  259 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 358  Q
    ||||||||||| ||  |||||  ||||||||||||||  ||||||| |||||||||||||||  || | | ||| ||||||| |||| ||  ||||||||    
T  45757644 atggcaatttacatatacatgttaatcagttttgtgcctttggaggcttctcaaagaattctaggacaccttttactattatctggacttttgtcttatt 45757545  T
Q  359 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 458  Q
    |  ||||||||||||| |||||||||  ||||| ||||| || | || |||| |  | | ||||||||||||||| || || ||||| ||||||||||||    
T  45757544 tgttatatggaaagattgcaacaggaaaattttccaaaatcacagtgatcatctaaatgctcttcttgaaagggttaagcttcaaacattttggtggttg 45757445  T
Q  459 aaagctaact 468  Q
    ||||| ||||    
T  45757444 aaagcaaact 45757435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 472
Target Start/End: Complemental strand, 40392658 - 40392461
Alignment:
Q  267 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 366  Q
    |||||| | ||| ||||||||||||||||||||||||| ||||||||||||||     ||| |   ||||||||||||||||||  |||||||  |||||    
T  40392658 ttatatgctcattcaaatcagttttgtgctcttggagggttctcaaagaattc-----aagga---tctattatttggatttcgaccttatttgttatat 40392567  T
Q  367 ggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 466  Q
    ||||||| || ||||  || |||||| | |||||| ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  40392566 ggaaagaccgtaacaatagaatttttgataaccaatttgatcaacttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaa 40392467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 181 - 358
Target Start/End: Complemental strand, 26996002 - 26995826
Alignment:
Q  181 atttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaatggcaatttatattcacatgc 280  Q
    ||||||||||| |||||||| | |||||||| || |||||| || ||||  ||||| | ||| | | ||| |||||  ||||| | |||||| | ||| |    
T  26996002 atttgtttttc-aatgtgatcactatggtcgtttgtggcttctgatatctcattggcttggtatcgatacagttcttcatggcgacttatatgctcattc 26995904  T
Q  281 aaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 358  Q
    ||||||||||||| |||||||||| |||||||| |||||   || | |||| ||| ||||||||||||||||||||||    
T  26995903 aaatcagttttgtactcttggagggttctcaaaaaattcaaggacaacattctctgttatttggatttcggtcttatt 26995826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 548
Target Start/End: Original strand, 32152387 - 32152500
Alignment:
Q  435 aaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattt 534  Q
    |||||| |||||||||||||||||||||| || |||||  |||||| |||| | ||| ||||||||||  |||| ||||||| ||||||| | |||  ||    
T  32152387 aaactctaaacgttttggtggttgaaagcgaattacatcatgttcgattttgactatccttattggaggaaaaatcctttactttgtttacagactgctt 32152486  T
Q  535 tgtaaagtctgttt 548  Q
    ||||| ||||||||    
T  32152487 tgtaatgtctgttt 32152500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Complemental strand, 26995765 - 26995712
Alignment:
Q  420 cttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 473  Q
    |||||||| | ||| ||||||||||| | ||||||||||||||| |||||||||    
T  26995765 cttcttgagaaggttaaactccaaacatattggtggttgaaagcgaactacatt 26995712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 161 - 549
Target Start/End: Complemental strand, 74357 - 73969
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| || ||||  ||||| | ||| ||||||| ||  |  ||    
T  74357 taaggaggaggaaatggaccatttgtttttccaatgtgattattatggtcagttatggcttttgatatcaaattggcttggttttgttacagtgtttcat 74258  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    |||||||||||| ||||||  ||||||||||| |||||  |||  ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||    
T  74257 ggcaatttatatacacatgataatcagttttgcgctctaagagacttctcaaagaattctatgaaagcttttactattatttggatttcggtcttattta 74158  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  74157 ctatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaa 74058  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 549  Q
    ||||||||||||   ||||| |||| | ||| | | |||||||||||| || |||  ||||||| | ||| | ||||||||||||||||    
T  74057 agctaactacatcacgttcgcttttgactatcccttttggagacaaaatcccttatgttgtttacagactgtcttgtaaagtctgtttt 73969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 161 - 550
Target Start/End: Original strand, 58559 - 58948
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggcttatgctatcggattggttaggtcttgttacggttctcaat 260  Q
    |||||||||||||||||| | ||||||||| ||||||||  |||||||||||||||||||  || ||||  ||||| | ||| ||||||||||  |  |     
T  58559 taaggaggaggaaagggaccgtttgttttttcaatgtgacaattatggtcggttatggctcttgatatcaaattggcttggttttgttacggtgtttcac 58658  T
Q  261 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 360  Q
    | ||||||| || ||||||| |||||||||||||||||||||||||||||||||||  || ||| ||| ||| ||||||||||||||||||||||||||     
T  58659 gacaatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaacgctatgatagcttttactattatttggatttcggtcttatttg 58758  T
Q  361 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 460  Q
     |||||||||||||||||||||||||||||| |||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| | ||||||||||||    
T  58759 ttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaacatattggtggttgaa 58858  T
Q  461 agctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 550  Q
    ||| |||| |||    |||| |||| | ||| | | |||||||||||| || |||  ||||||| | ||| | |||||| ||||||||||    
T  58859 agcaaacttcatcactttcgcttttgactatcccttttggagacaaaatcccttatgttgtttacagactgtcttgtaatgtctgttttt 58948  T

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Target: scaffold0003 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 468
Target Start/End: Original strand, 225060 - 225194
Alignment:
Q  334 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 433  Q
    |||| |||||||||||||| ||||||  |||||||||||||||||| ||||| || |||||||| ||  |||||||| | |||| |||| | |||| |||    
T  225060 ctatcatttggatttcggttttatttgttatatggaaagatcgcaataggagaatatttcaaaagcaggttgttcatcttgaagctcttttggaaaaggt 225159  T
Q  434 caaactccaaacgttttggtggttgaaagctaact 468  Q
     ||||| ||||||| |||||| |||||||| ||||    
T  225160 taaacttcaaacgtattggtgattgaaagcaaact 225194  T

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Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 224889 - 224948
Alignment:
Q  161 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 220  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||||||  ||||||||||    
T  224889 taaggaggaggaaagagaccatttatttttccaatgtgatcattatgggtggttatggct 224948  T

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Target: scaffold0289 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 357
Target Start/End: Complemental strand, 11026 - 10928
Alignment:
Q  259 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 357  Q
    ||||| ||||||||   ||| ||||||| |||||||||||||||||||| ||||| |||||    | | | || |||||||||||||||||||||||||    
T  11026 atggcgatttatataatcattcaaatcaattttgtgctcttggaggtttatcaaaaaattcaagtacaactttctctattatttggatttcggtcttat 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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